Wall clock time and date at job start Mon Mar 30 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 H 1.09004 * 109.46555 * 305.00329 * 3 2 1 5 5 C 1.52998 * 109.47137 * 185.00469 * 3 2 1 6 6 S 1.81395 * 109.47210 * 64.99923 * 3 2 1 7 7 C 1.81393 * 102.99940 * 185.00368 * 6 3 2 8 8 C 1.50708 * 109.47338 * 180.02562 * 7 6 3 9 9 N 1.28789 * 124.99326 * 89.99398 * 8 7 6 10 10 C 1.33644 * 116.06007 * 180.02562 * 9 8 7 11 11 C 1.41165 * 122.85939 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99743 * 186.62716 * 11 10 9 13 13 C 1.39720 * 120.00135 * 6.62633 * 11 10 9 14 14 N 1.31022 * 119.99806 * 183.18922 * 13 11 10 15 15 Si 1.86797 * 120.00035 * 3.18952 * 13 11 10 16 16 H 1.48497 * 109.46937 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47018 * 299.99763 * 15 13 11 18 18 H 1.48494 * 109.47086 * 59.99794 * 15 13 11 19 19 C 1.37691 * 114.27763 * 0.25271 * 10 9 8 20 20 S 1.70996 * 108.84044 * 359.62816 * 19 10 9 21 21 H 1.09001 * 109.46795 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47026 * 300.00107 * 1 2 3 23 23 H 1.08992 * 109.47472 * 60.00171 * 1 2 3 24 24 H 1.09004 * 109.47719 * 240.00175 * 2 1 3 25 25 H 1.09000 * 109.47782 * 119.99748 * 2 1 3 26 26 H 1.08994 * 109.47615 * 59.99706 * 5 3 2 27 27 H 1.09006 * 109.46814 * 180.02562 * 5 3 2 28 28 H 1.08996 * 109.47007 * 299.99522 * 5 3 2 29 29 H 1.09004 * 109.47716 * 60.00208 * 7 6 3 30 30 H 1.08998 * 109.47309 * 300.00045 * 7 6 3 31 31 H 0.97006 * 119.99892 * 354.83556 * 14 13 11 32 32 H 1.07999 * 125.58542 * 179.74282 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 16 1.5601 2.2536 1.5500 7 6 2.1077 3.9649 1.3015 8 6 1.7751 4.7813 2.5239 9 7 2.5515 4.9411 3.5390 10 6 2.0752 5.7031 4.5282 11 6 2.8044 5.9726 5.7065 12 1 2.3361 6.5044 6.5216 13 6 4.1318 5.5513 5.8183 14 7 4.7890 5.7459 6.9350 15 14 4.9696 4.7106 4.3758 16 1 6.3648 4.3637 4.7474 17 1 4.2285 3.4722 4.0262 18 1 4.9812 5.6271 3.2075 19 6 0.8102 6.1980 4.3028 20 16 0.2692 5.6551 2.7742 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8531 0.9570 -1.0572 27 1 3.9281 2.4721 -0.1254 28 1 3.9994 0.9054 0.7159 29 1 1.6004 4.3865 0.4337 30 1 3.1849 3.9814 1.1362 31 1 4.3802 6.2482 7.6572 32 1 0.2518 6.8277 4.9796 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083500160.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:50 Heat of formation + Delta-G solvation = 2.498885 kcal Electronic energy + Delta-G solvation = -14622.265254 eV Core-core repulsion = 12220.424149 eV Total energy + Delta-G solvation = -2401.841105 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.39078 -35.78116 -33.57161 -31.53227 -30.26363 -27.69080 -25.89084 -23.92685 -21.95595 -21.03011 -19.16587 -18.40735 -16.56393 -16.03256 -15.41148 -14.84244 -14.16230 -14.02142 -13.70594 -13.44565 -13.20586 -13.05699 -12.87076 -12.08027 -12.05473 -11.74352 -11.56310 -11.41342 -11.08693 -10.95139 -10.77532 -10.62533 -10.12733 -9.66099 -9.59392 -9.22312 -8.38010 -8.09968 -7.67183 -7.44610 -7.21327 -4.56360 1.30304 2.20904 2.44666 2.74643 3.31754 3.43993 3.54603 3.94969 4.11943 4.36839 4.57004 4.70999 4.76414 5.01964 5.21688 5.27214 5.29740 5.39632 5.47565 5.59278 5.64737 5.78381 5.84348 6.01010 6.10672 6.22664 6.38390 6.85789 7.12453 7.57356 8.04402 8.14696 8.69417 8.99376 10.12342 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.007115 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.847636 B = 3934.404197 C = 4742.438852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C -0.067 4.067 4 H 0.085 0.915 5 C -0.151 4.151 6 S -0.222 6.222 7 C -0.007 4.007 8 C 0.077 3.923 9 N -0.467 5.467 10 C 0.210 3.790 11 C -0.478 4.478 12 H 0.081 0.919 13 C 0.044 3.956 14 N -0.821 5.821 15 Si 1.120 2.880 16 H -0.318 1.318 17 H -0.266 1.266 18 H -0.290 1.290 19 C -0.445 4.445 20 S 0.040 5.960 21 H 0.053 0.947 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.281 0.719 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 -8.363 -14.925 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C -0.196 4.196 4 H 0.103 0.897 5 C -0.210 4.210 6 S 0.004 5.996 7 C -0.158 4.158 8 C -0.203 4.203 9 N -0.188 5.188 10 C 0.089 3.911 11 C -0.512 4.512 12 H 0.100 0.900 13 C -0.175 4.175 14 N -0.445 5.445 15 Si 0.952 3.048 16 H -0.249 1.249 17 H -0.192 1.192 18 H -0.218 1.218 19 C -0.585 4.585 20 S 0.288 5.712 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.996 -9.578 -14.910 18.167 hybrid contribution -0.515 1.825 0.604 1.990 sum -4.511 -7.754 -14.306 16.886 Atomic orbital electron populations 1.21852 0.95090 1.01581 1.02865 1.21346 0.96657 0.93339 1.02674 1.23257 0.99088 0.99504 0.97748 0.89655 1.22112 0.93525 1.02705 1.02613 1.87288 1.79771 1.07189 1.25343 1.21766 1.04940 0.93319 0.95768 1.26329 0.94416 1.02168 0.97365 1.66007 1.32989 1.17799 1.01975 1.18086 0.90704 0.90391 0.91954 1.20049 0.97818 1.34072 0.99286 0.90042 1.27480 0.94688 0.93903 1.01435 1.70717 1.40904 1.28988 1.03850 0.82517 0.71961 0.78433 0.71870 1.24884 1.19239 1.21750 1.25095 1.04068 1.25663 1.03718 1.82629 1.21449 1.49281 1.17829 0.92785 0.91225 0.92758 0.90931 0.90999 0.91984 0.92322 0.91109 0.88514 0.88000 0.90761 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.74 37.15 0.36 -1.14 16 2 C -0.10 -0.98 5.40 -26.73 -0.14 -1.13 16 3 C -0.07 -0.74 2.82 -26.73 -0.08 -0.82 16 4 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 5 C -0.15 -1.57 9.10 37.16 0.34 -1.23 16 6 S -0.22 -3.50 19.94 -107.50 -2.14 -5.65 16 7 C -0.01 -0.11 6.24 36.01 0.22 0.12 16 8 C 0.08 1.66 6.83 -13.55 -0.09 1.57 16 9 N -0.47 -11.84 5.30 -8.35 -0.04 -11.89 16 10 C 0.21 5.70 6.26 -86.17 -0.54 5.16 16 11 C -0.48 -13.78 9.67 -37.92 -0.37 -14.14 16 12 H 0.08 2.38 8.05 -52.49 -0.42 1.96 16 13 C 0.04 1.25 5.51 -17.34 -0.10 1.16 16 14 N -0.82 -23.48 13.67 55.54 0.76 -22.72 16 15 Si 1.12 28.22 25.70 -169.99 -4.37 23.85 16 16 H -0.32 -7.85 7.11 56.52 0.40 -7.44 16 17 H -0.27 -6.65 6.70 56.52 0.38 -6.27 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 C -0.45 -11.03 10.98 30.53 0.34 -10.70 16 20 S 0.04 0.82 23.16 -107.50 -2.49 -1.67 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.79 7.13 -51.93 -0.37 0.42 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.63 6.92 -51.93 -0.36 0.27 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 1.31 8.14 -51.92 -0.42 0.88 16 30 H 0.10 1.63 7.14 -51.92 -0.37 1.26 16 31 H 0.28 7.74 8.73 -40.82 -0.36 7.38 16 32 H 0.14 3.44 8.06 -52.49 -0.42 3.02 16 LS Contribution 292.41 15.07 4.41 4.41 Total: -1.00 -30.20 292.41 -8.44 -38.63 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -4.50 Total: -3.82 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.71 Total: -34.61 kcal Atomic # 14 Polarization: 28.22 SS G_CDS: -4.37 Total: 23.85 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -4.63 Total: -7.31 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.20 -8.44 -38.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083500160.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.131 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds