Wall clock time and date at job start Mon Mar 30 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 H 1.09004 * 109.46555 * 305.00329 * 3 2 1 5 5 C 1.52998 * 109.47137 * 185.00469 * 3 2 1 6 6 S 1.81395 * 109.47210 * 64.99923 * 3 2 1 7 7 C 1.81393 * 102.99940 * 185.00368 * 6 3 2 8 8 C 1.50708 * 109.47338 * 180.02562 * 7 6 3 9 9 N 1.28789 * 124.99326 * 89.99398 * 8 7 6 10 10 C 1.33644 * 116.06007 * 180.02562 * 9 8 7 11 11 C 1.41165 * 122.85939 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99743 * 186.62716 * 11 10 9 13 13 C 1.39720 * 120.00135 * 6.62633 * 11 10 9 14 14 N 1.31022 * 119.99806 * 183.18922 * 13 11 10 15 15 Si 1.86797 * 120.00035 * 3.18952 * 13 11 10 16 16 H 1.48497 * 109.46937 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47018 * 299.99763 * 15 13 11 18 18 H 1.48494 * 109.47086 * 59.99794 * 15 13 11 19 19 C 1.37691 * 114.27763 * 0.25271 * 10 9 8 20 20 S 1.70996 * 108.84044 * 359.62816 * 19 10 9 21 21 H 1.09001 * 109.46795 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47026 * 300.00107 * 1 2 3 23 23 H 1.08992 * 109.47472 * 60.00171 * 1 2 3 24 24 H 1.09004 * 109.47719 * 240.00175 * 2 1 3 25 25 H 1.09000 * 109.47782 * 119.99748 * 2 1 3 26 26 H 1.08994 * 109.47615 * 59.99706 * 5 3 2 27 27 H 1.09006 * 109.46814 * 180.02562 * 5 3 2 28 28 H 1.08996 * 109.47007 * 299.99522 * 5 3 2 29 29 H 1.09004 * 109.47716 * 60.00208 * 7 6 3 30 30 H 1.08998 * 109.47309 * 300.00045 * 7 6 3 31 31 H 0.97006 * 119.99892 * 354.83556 * 14 13 11 32 32 H 1.07999 * 125.58542 * 179.74282 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 16 1.5601 2.2536 1.5500 7 6 2.1077 3.9649 1.3015 8 6 1.7751 4.7813 2.5239 9 7 2.5515 4.9411 3.5390 10 6 2.0752 5.7031 4.5282 11 6 2.8044 5.9726 5.7065 12 1 2.3361 6.5044 6.5216 13 6 4.1318 5.5513 5.8183 14 7 4.7890 5.7459 6.9350 15 14 4.9696 4.7106 4.3758 16 1 6.3648 4.3637 4.7474 17 1 4.2285 3.4722 4.0262 18 1 4.9812 5.6271 3.2075 19 6 0.8102 6.1980 4.3028 20 16 0.2692 5.6551 2.7742 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8531 0.9570 -1.0572 27 1 3.9281 2.4721 -0.1254 28 1 3.9994 0.9054 0.7159 29 1 1.6004 4.3865 0.4337 30 1 3.1849 3.9814 1.1362 31 1 4.3802 6.2482 7.6572 32 1 0.2518 6.8277 4.9796 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083500160.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:50 Heat of formation + Delta-G solvation = -14.702875 kcal Electronic energy + Delta-G solvation = -14623.011178 eV Core-core repulsion = 12220.424149 eV Total energy + Delta-G solvation = -2402.587029 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28635 -36.57660 -35.61011 -33.17849 -31.14621 -29.39295 -27.92812 -24.69688 -23.47664 -22.14171 -21.15857 -20.31882 -18.04941 -17.49222 -16.67467 -16.49695 -15.57133 -15.12060 -15.04190 -14.91978 -14.70101 -14.62556 -14.09022 -13.92548 -13.32070 -12.98975 -12.77252 -12.66072 -12.53218 -12.20217 -11.98737 -11.86246 -11.74139 -11.67164 -11.28814 -10.69655 -10.18936 -9.96192 -9.59427 -9.35214 -8.64458 -6.68983 -0.22720 0.64402 0.86769 1.39026 1.43815 1.52716 1.62174 1.97492 2.14623 2.37813 3.11333 3.20012 3.79059 3.94754 4.00720 4.25496 4.28312 4.52215 4.61679 4.65621 4.75825 4.89471 4.89836 5.01527 5.10460 5.14290 5.26214 5.32901 5.39073 5.48585 5.91633 6.05298 6.62646 7.06274 7.97792 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.007115 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.847636 B = 3934.404197 C = 4742.438852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.101 4.101 3 C -0.048 4.048 4 H 0.106 0.894 5 C -0.152 4.152 6 S -0.277 6.277 7 C -0.006 4.006 8 C 0.081 3.919 9 N -0.504 5.504 10 C 0.191 3.809 11 C -0.515 4.515 12 H 0.056 0.944 13 C 0.013 3.987 14 N -0.848 5.848 15 Si 1.159 2.841 16 H -0.315 1.315 17 H -0.266 1.266 18 H -0.284 1.284 19 C -0.461 4.461 20 S 0.127 5.873 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.134 0.866 30 H 0.109 0.891 31 H 0.276 0.724 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -9.665 -18.736 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.139 4.139 3 C -0.176 4.176 4 H 0.124 0.876 5 C -0.211 4.211 6 S -0.051 6.051 7 C -0.157 4.157 8 C -0.198 4.198 9 N -0.225 5.225 10 C 0.069 3.931 11 C -0.550 4.550 12 H 0.075 0.925 13 C -0.200 4.200 14 N -0.473 5.473 15 Si 0.988 3.012 16 H -0.246 1.246 17 H -0.193 1.193 18 H -0.211 1.211 19 C -0.600 4.600 20 S 0.376 5.624 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.120 0.880 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.860 -10.862 -18.728 22.188 hybrid contribution -0.513 2.176 1.596 2.747 sum -5.373 -8.686 -17.132 19.945 Atomic orbital electron populations 1.21832 0.95064 1.02141 1.02234 1.21396 0.96666 0.92457 1.03406 1.23393 0.99677 0.99679 0.94858 0.87558 1.22129 0.92778 1.02662 1.03518 1.87515 1.80110 1.07390 1.30086 1.21940 1.06030 0.93270 0.94481 1.27234 0.94170 1.00921 0.97517 1.65959 1.34479 1.19247 1.02857 1.18171 0.91457 0.91146 0.92341 1.20030 0.98768 1.36130 1.00115 0.92543 1.28380 0.95055 0.93993 1.02593 1.70753 1.41233 1.30894 1.04380 0.82009 0.71237 0.77831 0.70140 1.24609 1.19263 1.21085 1.25514 1.03688 1.24500 1.06337 1.82230 1.19591 1.46982 1.13554 0.91751 0.93524 0.91613 0.88050 0.92258 0.89120 0.92697 0.92466 0.84808 0.87315 0.91338 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.74 71.98 0.70 -1.81 16 2 C -0.10 -1.60 5.40 30.59 0.17 -1.43 16 3 C -0.05 -0.87 2.82 30.60 0.09 -0.79 16 4 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.15 -2.62 9.10 71.98 0.66 -1.96 16 6 S -0.28 -8.04 19.94 -56.49 -1.13 -9.16 16 7 C -0.01 -0.19 6.24 71.24 0.44 0.26 16 8 C 0.08 3.28 6.83 88.56 0.60 3.89 16 9 N -0.50 -25.13 5.30 -180.34 -0.96 -26.09 16 10 C 0.19 10.50 6.26 39.46 0.25 10.74 16 11 C -0.52 -30.96 9.67 23.35 0.23 -30.74 16 12 H 0.06 3.52 8.05 -2.91 -0.02 3.50 16 13 C 0.01 0.79 5.51 85.17 0.47 1.26 16 14 N -0.85 -50.39 13.67 21.79 0.30 -50.09 16 15 Si 1.16 58.12 25.70 68.60 1.76 59.88 16 16 H -0.31 -15.31 7.11 99.48 0.71 -14.60 16 17 H -0.27 -13.18 6.70 99.48 0.67 -12.51 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 19 C -0.46 -22.57 10.98 67.69 0.74 -21.83 16 20 S 0.13 4.84 23.16 -56.49 -1.31 3.53 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.05 0.97 7.13 -2.38 -0.02 0.95 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 0.99 6.92 -2.38 -0.02 0.98 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.11 3.13 7.14 -2.39 -0.02 3.12 16 31 H 0.28 16.05 8.73 -92.70 -0.81 15.24 16 32 H 0.14 6.88 8.06 -2.91 -0.02 6.86 16 Total: -1.00 -67.20 292.41 4.03 -63.17 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.02 Total: 1.17 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 4.34 Total: -42.41 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -0.66 Total: -76.18 kcal Atomic # 14 Polarization: 58.12 SS G_CDS: 1.76 Total: 59.88 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.43 Total: -5.64 kcal Total: -67.20 4.03 -63.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083500160.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.465 kcal (2) G-P(sol) polarization free energy of solvation -67.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds