Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76203 * 103.00298 * 2 1 4 4 C 1.38715 * 120.08490 * 359.72644 * 3 2 1 5 5 C 1.38253 * 120.00414 * 180.25313 * 4 3 2 6 6 C 1.38365 * 120.18123 * 0.04443 * 5 4 3 7 7 Cl 1.73604 * 119.90947 * 179.97438 * 6 5 4 8 8 C 1.38372 * 120.18301 * 359.95533 * 6 5 4 9 9 C 1.38644 * 119.99153 * 0.02562 * 8 6 5 10 10 N 1.40003 * 120.09605 * 179.97438 * 9 8 6 11 11 C 1.46499 * 119.99719 * 0.02562 * 10 9 8 12 12 C 1.50694 * 109.47336 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00382 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99817 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00337 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47194 * 59.99980 * 16 14 12 18 18 H 1.48499 * 109.47303 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47385 * 300.00432 * 16 14 12 20 20 H 1.09004 * 109.46984 * 299.99675 * 1 2 3 21 21 H 1.09005 * 109.47422 * 59.99815 * 1 2 3 22 22 H 1.08996 * 109.47387 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.99701 * 0.24905 * 4 3 2 24 24 H 1.07999 * 119.90687 * 180.02562 * 5 4 3 25 25 H 1.07997 * 120.00987 * 180.02562 * 8 6 5 26 26 H 0.96991 * 120.00438 * 180.02562 * 10 9 8 27 27 H 1.09000 * 109.47248 * 300.00293 * 11 10 9 28 28 H 1.09009 * 109.47124 * 59.99985 * 11 10 9 29 29 H 0.97005 * 120.00439 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1973 2.6644 -0.0057 5 6 1.5103 4.0111 -0.0110 6 6 2.8328 4.4178 -0.0115 7 17 3.2178 6.1106 -0.0188 8 6 3.8494 3.4791 -0.0058 9 6 3.5439 2.1268 -0.0001 10 7 4.5708 1.1751 0.0051 11 6 5.9704 1.6078 0.0051 12 6 6.8700 0.3988 0.0106 13 1 6.4420 -0.5927 0.0142 14 6 8.2395 0.5584 0.0121 15 7 8.7607 1.7658 0.0083 16 14 9.3545 -0.9402 0.0197 17 1 9.0903 -1.7599 -1.1901 18 1 10.7733 -0.5016 0.0208 19 1 9.0865 -1.7507 1.2348 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.1641 2.3502 -0.0061 24 1 0.7204 4.7475 -0.0151 25 1 4.8807 3.7997 -0.0058 26 1 4.3556 0.2294 0.0087 27 1 6.1669 2.2024 -0.8870 28 1 6.1647 2.2097 0.8930 29 1 9.7242 1.8782 0.0097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084908649.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = 8.679221 kcal Electronic energy + Delta-G solvation = -14206.243459 eV Core-core repulsion = 11666.793553 eV Total energy + Delta-G solvation = -2539.449906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.03486 -36.31525 -35.04131 -32.68687 -30.79933 -29.37361 -28.77225 -26.38810 -23.33547 -22.26631 -20.91249 -17.91939 -16.75493 -16.21163 -15.61787 -14.81486 -14.50515 -14.09501 -14.00761 -13.80445 -13.43114 -13.18297 -12.55756 -12.54999 -12.11960 -11.95822 -11.47309 -11.15409 -10.94506 -10.93799 -10.63850 -10.20060 -10.05685 -9.58996 -9.45785 -9.15980 -8.58684 -7.56802 -6.54143 -6.23484 -4.29333 1.39953 1.70290 1.86505 2.40743 2.65657 3.23912 3.28406 3.30526 3.98354 4.18419 4.42854 5.01266 5.03366 5.03622 5.13833 5.41198 5.56450 5.70528 5.79323 6.01344 6.31959 6.48015 6.62665 6.86185 7.11305 7.33397 7.56207 7.87444 8.09534 8.51587 8.81186 9.37043 10.86946 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.006514 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.525031 B = 4297.674735 C = 5929.751605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.123 6.123 3 C -0.180 4.180 4 C -0.071 4.071 5 C -0.179 4.179 6 C 0.020 3.980 7 Cl -0.082 7.082 8 C -0.182 4.182 9 C 0.267 3.733 10 N -0.713 5.713 11 C 0.248 3.752 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.905 3.095 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.103 0.897 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.142 0.858 26 H 0.397 0.603 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.201 1.693 -0.031 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.116 5.884 3 C -0.297 4.297 4 C -0.096 4.096 5 C -0.202 4.202 6 C -0.009 4.009 7 Cl -0.053 7.053 8 C -0.208 4.208 9 C 0.150 3.850 10 N -0.335 5.335 11 C 0.127 3.873 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.138 4.138 15 N -0.525 5.525 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 H 0.099 0.901 21 H 0.099 0.901 22 H 0.121 0.879 23 H 0.141 0.859 24 H 0.142 0.858 25 H 0.159 0.841 26 H 0.233 0.767 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.042 0.927 -0.032 14.072 hybrid contribution -0.179 0.246 0.006 0.304 sum -14.220 1.172 -0.025 14.269 Atomic orbital electron populations 1.23604 0.95644 1.06537 1.05230 1.85298 1.05473 1.03772 1.93831 1.21054 0.94789 0.96422 1.17482 1.20662 0.97330 0.91975 0.99607 1.20424 0.94183 0.95411 1.10195 1.20576 0.94086 0.83941 1.02341 1.98340 1.94807 1.15299 1.96894 1.20502 0.99778 0.90071 1.10456 1.17374 0.86590 0.89595 0.91394 1.45756 1.05596 1.06467 1.75636 1.19237 0.74492 0.96624 0.96972 1.21113 0.91157 0.92435 1.53239 0.91909 1.24912 0.97934 0.96449 0.94502 1.69930 1.12496 1.21163 1.48938 0.86451 0.79252 0.82304 0.78837 1.19986 1.21016 1.19993 0.90081 0.90076 0.87854 0.85868 0.85778 0.84070 0.76743 0.95726 0.95726 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.15 101.05 0.92 -0.44 15 2 S -0.12 -1.80 21.09 -107.50 -2.27 -4.07 15 3 C -0.18 -3.00 6.12 -38.93 -0.24 -3.24 15 4 C -0.07 -1.02 9.36 -39.40 -0.37 -1.38 15 5 C -0.18 -2.59 9.82 -39.53 -0.39 -2.98 15 6 C 0.02 0.33 6.32 -39.49 -0.25 0.08 15 7 Cl -0.08 -1.23 28.95 -51.86 -1.50 -2.73 15 8 C -0.18 -3.45 9.09 -39.38 -0.36 -3.80 15 9 C 0.27 5.18 6.66 -83.50 -0.56 4.63 15 10 N -0.71 -15.37 5.68 -59.62 -0.34 -15.71 15 11 C 0.25 6.24 4.67 -5.20 -0.02 6.22 15 12 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 15 13 H 0.06 1.64 7.60 -52.49 -0.40 1.24 15 14 C 0.07 1.80 5.46 -17.82 -0.10 1.70 15 15 N -0.89 -25.34 13.29 55.43 0.74 -24.60 15 16 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 15 17 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 20 H 0.08 0.71 7.76 -51.92 -0.40 0.31 15 21 H 0.08 0.71 7.74 -51.92 -0.40 0.31 15 22 H 0.10 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.12 1.38 5.87 -52.49 -0.31 1.07 15 24 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 25 H 0.14 2.86 6.74 -52.49 -0.35 2.50 15 26 H 0.40 8.30 6.87 -40.82 -0.28 8.02 15 27 H 0.02 0.67 7.95 -51.93 -0.41 0.25 15 28 H 0.02 0.67 7.95 -51.92 -0.41 0.25 15 29 H 0.27 7.20 8.31 -40.82 -0.34 6.87 15 LS Contribution 278.77 15.07 4.20 4.20 Total: -1.00 -27.91 278.77 -8.82 -36.72 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.95 Total: 4.53 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.68 Total: -14.17 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.40 Total: -40.31 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.27 Total: -4.07 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.91 -8.82 -36.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084908649.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.404 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds