Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76203 * 103.00298 * 2 1 4 4 C 1.38715 * 120.08490 * 359.72644 * 3 2 1 5 5 C 1.38253 * 120.00414 * 180.25313 * 4 3 2 6 6 C 1.38365 * 120.18123 * 0.04443 * 5 4 3 7 7 Cl 1.73604 * 119.90947 * 179.97438 * 6 5 4 8 8 C 1.38372 * 120.18301 * 359.95533 * 6 5 4 9 9 C 1.38644 * 119.99153 * 0.02562 * 8 6 5 10 10 N 1.40003 * 120.09605 * 179.97438 * 9 8 6 11 11 C 1.46499 * 119.99719 * 0.02562 * 10 9 8 12 12 C 1.50694 * 109.47336 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00382 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99817 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00337 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47194 * 59.99980 * 16 14 12 18 18 H 1.48499 * 109.47303 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47385 * 300.00432 * 16 14 12 20 20 H 1.09004 * 109.46984 * 299.99675 * 1 2 3 21 21 H 1.09005 * 109.47422 * 59.99815 * 1 2 3 22 22 H 1.08996 * 109.47387 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.99701 * 0.24905 * 4 3 2 24 24 H 1.07999 * 119.90687 * 180.02562 * 5 4 3 25 25 H 1.07997 * 120.00987 * 180.02562 * 8 6 5 26 26 H 0.96991 * 120.00438 * 180.02562 * 10 9 8 27 27 H 1.09000 * 109.47248 * 300.00293 * 11 10 9 28 28 H 1.09009 * 109.47124 * 59.99985 * 11 10 9 29 29 H 0.97005 * 120.00439 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1973 2.6644 -0.0057 5 6 1.5103 4.0111 -0.0110 6 6 2.8328 4.4178 -0.0115 7 17 3.2178 6.1106 -0.0188 8 6 3.8494 3.4791 -0.0058 9 6 3.5439 2.1268 -0.0001 10 7 4.5708 1.1751 0.0051 11 6 5.9704 1.6078 0.0051 12 6 6.8700 0.3988 0.0106 13 1 6.4420 -0.5927 0.0142 14 6 8.2395 0.5584 0.0121 15 7 8.7607 1.7658 0.0083 16 14 9.3545 -0.9402 0.0197 17 1 9.0903 -1.7599 -1.1901 18 1 10.7733 -0.5016 0.0208 19 1 9.0865 -1.7507 1.2348 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.1641 2.3502 -0.0061 24 1 0.7204 4.7475 -0.0151 25 1 4.8807 3.7997 -0.0058 26 1 4.3556 0.2294 0.0087 27 1 6.1669 2.2024 -0.8870 28 1 6.1647 2.2097 0.8930 29 1 9.7242 1.8782 0.0097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084908649.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = -7.179213 kcal Electronic energy + Delta-G solvation = -14206.931132 eV Core-core repulsion = 11666.793553 eV Total energy + Delta-G solvation = -2540.137580 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39626 -37.63183 -36.63127 -34.64499 -32.04941 -30.98745 -29.63786 -28.18159 -25.07394 -23.68455 -22.42624 -19.49007 -18.30490 -17.62898 -17.28536 -16.47131 -15.90493 -15.40447 -15.22910 -15.15599 -14.82704 -14.47932 -14.08301 -14.03109 -13.42359 -13.17248 -12.91827 -12.85427 -12.64832 -12.46999 -12.14868 -11.83301 -11.52264 -11.13731 -11.09028 -10.60825 -10.39700 -8.91841 -8.32660 -7.92904 -6.47127 0.08871 0.54474 0.62445 1.15463 1.39969 1.43036 1.51315 1.61255 2.32348 2.65208 2.77269 3.02504 3.80085 4.20620 4.32690 4.36186 4.38552 4.45724 4.66065 4.91240 4.94228 5.04167 5.17273 5.22895 5.32512 5.47403 5.70472 5.85332 6.31912 6.63917 6.98013 7.25337 8.78777 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.006514 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.525031 B = 4297.674735 C = 5929.751605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.167 6.167 3 C -0.175 4.175 4 C -0.064 4.064 5 C -0.160 4.160 6 C 0.010 3.990 7 Cl -0.071 7.071 8 C -0.204 4.204 9 C 0.233 3.767 10 N -0.724 5.724 11 C 0.271 3.729 12 C -0.560 4.560 13 H 0.068 0.932 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.977 3.023 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.266 1.266 20 H 0.097 0.903 21 H 0.097 0.903 22 H 0.125 0.875 23 H 0.166 0.834 24 H 0.160 0.840 25 H 0.112 0.888 26 H 0.399 0.601 27 H -0.005 1.005 28 H -0.005 1.005 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.913 0.865 -0.032 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.072 5.928 3 C -0.292 4.292 4 C -0.088 4.088 5 C -0.182 4.182 6 C -0.020 4.020 7 Cl -0.042 7.042 8 C -0.230 4.230 9 C 0.121 3.879 10 N -0.349 5.349 11 C 0.149 3.851 12 C -0.598 4.598 13 H 0.086 0.914 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.800 3.200 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.191 1.191 20 H 0.116 0.884 21 H 0.116 0.884 22 H 0.143 0.857 23 H 0.184 0.816 24 H 0.178 0.822 25 H 0.130 0.870 26 H 0.234 0.766 27 H 0.013 0.987 28 H 0.013 0.987 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.812 0.116 -0.032 16.813 hybrid contribution 0.453 0.587 0.006 0.742 sum -16.359 0.703 -0.027 16.375 Atomic orbital electron populations 1.23764 0.90470 1.08538 1.06781 1.85520 1.11069 1.02609 1.93569 1.21297 0.93950 0.98193 1.15740 1.21172 0.98688 0.91281 0.97677 1.20894 0.93827 0.96454 1.07024 1.20702 0.94499 0.84178 1.02574 1.98339 1.94932 1.14129 1.96834 1.20415 0.99258 0.90964 1.12334 1.17629 0.87513 0.89303 0.93454 1.45338 1.04456 1.06876 1.78270 1.18637 0.76931 0.95447 0.94120 1.21489 0.91984 0.93061 1.53264 0.91389 1.25889 0.99507 0.99599 0.93758 1.70065 1.12946 1.23490 1.49732 0.85322 0.76995 0.78371 0.79280 1.19055 1.20475 1.19065 0.88443 0.88433 0.85689 0.81644 0.82227 0.87031 0.76563 0.98742 0.98740 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.15 113.37 1.04 -0.87 15 2 S -0.17 -4.63 21.09 -56.49 -1.19 -5.82 15 3 C -0.17 -5.62 6.12 22.69 0.14 -5.48 15 4 C -0.06 -1.60 9.36 22.39 0.21 -1.39 15 5 C -0.16 -4.12 9.82 22.30 0.22 -3.90 15 6 C 0.01 0.32 6.32 22.33 0.14 0.46 15 7 Cl -0.07 -2.09 28.95 -2.72 -0.08 -2.16 15 8 C -0.20 -8.10 9.09 22.40 0.20 -7.89 15 9 C 0.23 9.38 6.66 38.24 0.25 9.64 15 10 N -0.72 -33.01 5.68 -342.55 -1.94 -34.96 15 11 C 0.27 14.69 4.67 85.63 0.40 15.09 15 12 C -0.56 -31.46 9.28 25.60 0.24 -31.23 15 13 H 0.07 3.65 7.60 -2.91 -0.02 3.63 15 14 C 0.01 0.71 5.46 84.65 0.46 1.18 15 15 N -0.92 -54.71 13.29 21.45 0.28 -54.43 15 16 Si 0.98 43.23 29.54 68.60 2.03 45.26 15 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 15 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 20 H 0.10 1.20 7.76 -2.39 -0.02 1.18 15 21 H 0.10 1.20 7.74 -2.39 -0.02 1.18 15 22 H 0.12 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.17 2.74 5.87 -2.91 -0.02 2.72 15 24 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 25 H 0.11 4.99 6.74 -2.91 -0.02 4.97 15 26 H 0.40 17.44 6.87 -92.71 -0.64 16.80 15 27 H -0.01 -0.31 7.95 -2.39 -0.02 -0.32 15 28 H -0.01 -0.30 7.95 -2.38 -0.02 -0.32 15 29 H 0.27 14.98 8.31 -92.70 -0.77 14.20 15 Total: -1.00 -63.56 278.77 2.94 -60.62 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.54 Total: 15.88 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.30 Total: -24.39 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -1.66 Total: -89.39 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -1.19 Total: -5.82 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.08 Total: -2.16 kcal Total: -63.56 2.94 -60.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084908649.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.444 kcal (2) G-P(sol) polarization free energy of solvation -63.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds