Wall clock time and date at job start Mon Mar 30 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00131 * 2 1 4 4 H 1.48497 * 109.47406 * 240.00228 * 3 2 1 5 5 H 1.48499 * 109.47521 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46919 * 120.00650 * 3 2 1 7 7 C 1.37884 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47201 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47328 * 179.97438 * 10 9 7 12 12 C 1.76204 * 103.00127 * 180.02562 * 11 10 9 13 13 C 1.38924 * 120.00359 * 180.02562 * 12 11 10 14 14 C 1.38094 * 120.01422 * 180.02562 * 13 12 11 15 15 C 1.38841 * 120.01704 * 0.23547 * 14 13 12 16 16 N 1.40072 * 119.99829 * 179.73990 * 15 14 13 17 17 C 1.38959 * 120.00206 * 359.48876 * 15 14 13 18 18 Cl 1.73602 * 120.00615 * 180.23043 * 17 15 14 19 19 C 1.38176 * 119.98735 * 0.53011 * 17 15 14 20 20 H 0.97008 * 119.99468 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47369 * 59.99950 * 9 7 2 22 22 H 1.08994 * 109.47268 * 300.00142 * 9 7 2 23 23 H 1.09004 * 109.46790 * 59.99852 * 10 9 7 24 24 H 1.08994 * 109.47335 * 300.00358 * 10 9 7 25 25 H 1.07996 * 119.99603 * 0.02562 * 13 12 11 26 26 H 1.08002 * 119.98872 * 179.97438 * 14 13 12 27 27 H 0.97000 * 120.00243 * 0.02562 * 16 15 14 28 28 H 0.97003 * 120.00590 * 179.97438 * 16 15 14 29 29 H 1.08001 * 120.00802 * 179.74815 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3380 -5.2330 -0.0011 12 6 2.6266 -6.4348 -0.0019 13 6 2.3141 -7.7884 -0.0021 14 6 3.3238 -8.7305 -0.0023 15 6 4.6517 -8.3253 0.0028 16 7 5.6756 -9.2812 0.0081 17 6 4.9652 -6.9716 -0.0028 18 17 6.6256 -6.4648 -0.0026 19 6 3.9550 -6.0288 -0.0023 20 1 -0.4850 0.8402 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8724 -3.6048 0.8877 24 1 2.8711 -3.6040 -0.8922 25 1 1.2813 -8.1041 -0.0022 26 1 3.0803 -9.7827 -0.0020 27 1 5.4568 -10.2262 0.0079 28 1 6.6034 -8.9983 0.0113 29 1 4.1982 -4.9765 -0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085937876.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:18 Heat of formation + Delta-G solvation = -0.754203 kcal Electronic energy + Delta-G solvation = -13820.685719 eV Core-core repulsion = 11280.826748 eV Total energy + Delta-G solvation = -2539.858970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.35175 -36.42710 -34.62697 -33.75313 -31.22580 -30.50768 -28.73987 -25.35833 -22.98650 -22.38633 -21.03609 -17.71746 -17.07807 -16.83592 -16.49795 -14.76056 -14.53375 -14.44705 -14.10314 -14.00382 -13.73152 -13.65527 -12.55352 -11.90104 -11.72347 -11.56390 -11.46834 -11.23855 -10.96810 -10.91741 -10.63749 -10.22993 -9.77404 -9.66205 -9.14069 -8.87054 -8.44234 -8.36441 -6.70920 -6.07891 -4.12522 1.20094 1.37992 2.03252 2.19377 3.10678 3.30457 3.35001 3.37667 3.63952 3.66667 4.40941 4.70983 5.13041 5.27903 5.30794 5.42075 5.78088 5.90622 5.90866 6.04465 6.10297 6.35297 6.57798 6.66800 7.20600 7.51289 7.53508 7.58966 7.87365 8.24364 8.91779 9.51562 11.02870 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.029112 B = 0.004641 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.579919 B = 6031.624384 C = 6972.753705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.038 3.962 10 C -0.081 4.081 11 S -0.139 6.139 12 C -0.116 4.116 13 C -0.053 4.053 14 C -0.170 4.170 15 C 0.211 3.789 16 N -0.876 5.876 17 C -0.093 4.093 18 Cl -0.076 7.076 19 C -0.078 4.078 20 H 0.263 0.737 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.399 0.601 28 H 0.399 0.601 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.501 -18.166 0.005 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.229 4.229 11 S 0.107 5.893 12 C -0.230 4.230 13 C -0.077 4.077 14 C -0.195 4.195 15 C 0.103 3.897 16 N -0.418 5.418 17 C -0.126 4.126 18 Cl -0.048 7.048 19 C -0.103 4.103 20 H 0.073 0.927 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.227 0.773 28 H 0.228 0.772 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.202 -18.030 0.007 19.807 hybrid contribution 2.296 0.871 0.001 2.456 sum 10.498 -17.158 0.008 20.115 Atomic orbital electron populations 1.69961 1.06066 1.27041 1.49813 1.25007 0.94912 0.99319 0.94968 0.86569 0.79522 0.82696 0.78719 1.20118 1.21154 1.20122 1.21032 0.93020 0.90135 1.52029 0.92396 1.18907 0.93323 0.89194 0.98660 1.24011 1.02246 0.92817 1.03845 1.85593 1.11961 1.00028 1.91767 1.21653 0.96111 0.97573 1.07697 1.20643 0.99327 0.90462 0.97288 1.20426 0.89779 0.99666 1.09587 1.17426 0.89152 0.87328 0.95748 1.42541 1.06822 1.06975 1.85424 1.20199 0.85222 0.92025 1.15129 1.98329 1.18003 1.91004 1.97459 1.21010 0.90456 0.99643 0.99216 0.92684 0.95387 0.95380 0.90637 0.90628 0.85002 0.85149 0.77283 0.77154 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.04 0.97 4.98 -27.89 -0.14 0.83 15 10 C -0.08 -1.68 4.27 37.16 0.16 -1.52 15 11 S -0.14 -2.55 21.92 -107.50 -2.36 -4.91 15 12 C -0.12 -1.82 6.11 -39.08 -0.24 -2.06 15 13 C -0.05 -0.69 9.78 -39.38 -0.39 -1.08 15 14 C -0.17 -1.90 9.89 -39.41 -0.39 -2.29 15 15 C 0.21 2.47 6.76 -83.60 -0.56 1.90 15 16 N -0.88 -7.38 9.06 32.49 0.29 -7.09 15 17 C -0.09 -1.27 6.33 -39.34 -0.25 -1.52 15 18 Cl -0.08 -0.95 27.58 -51.86 -1.43 -2.38 15 19 C -0.08 -1.20 9.14 -39.36 -0.36 -1.56 15 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.08 1.51 7.74 -51.92 -0.40 1.11 15 24 H 0.08 1.51 7.75 -51.93 -0.40 1.11 15 25 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 26 H 0.13 1.06 8.06 -52.49 -0.42 0.64 15 27 H 0.40 2.32 8.84 -40.82 -0.36 1.96 15 28 H 0.40 3.17 7.50 -40.82 -0.31 2.87 15 29 H 0.14 2.21 5.86 -52.49 -0.31 1.90 15 LS Contribution 280.68 15.07 4.23 4.23 Total: -1.00 -29.68 280.68 -9.14 -38.82 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -3.01 Total: 1.11 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -2.58 Total: -20.48 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 1.03 Total: -32.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.36 Total: -4.91 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.43 Total: -2.38 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.68 -9.14 -38.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085937876.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.064 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds