Wall clock time and date at job start Mon Mar 30 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00131 * 2 1 4 4 H 1.48497 * 109.47406 * 240.00228 * 3 2 1 5 5 H 1.48499 * 109.47521 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46919 * 120.00650 * 3 2 1 7 7 C 1.37884 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47201 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47328 * 179.97438 * 10 9 7 12 12 C 1.76204 * 103.00127 * 180.02562 * 11 10 9 13 13 C 1.38924 * 120.00359 * 180.02562 * 12 11 10 14 14 C 1.38094 * 120.01422 * 180.02562 * 13 12 11 15 15 C 1.38841 * 120.01704 * 0.23547 * 14 13 12 16 16 N 1.40072 * 119.99829 * 179.73990 * 15 14 13 17 17 C 1.38959 * 120.00206 * 359.48876 * 15 14 13 18 18 Cl 1.73602 * 120.00615 * 180.23043 * 17 15 14 19 19 C 1.38176 * 119.98735 * 0.53011 * 17 15 14 20 20 H 0.97008 * 119.99468 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47369 * 59.99950 * 9 7 2 22 22 H 1.08994 * 109.47268 * 300.00142 * 9 7 2 23 23 H 1.09004 * 109.46790 * 59.99852 * 10 9 7 24 24 H 1.08994 * 109.47335 * 300.00358 * 10 9 7 25 25 H 1.07996 * 119.99603 * 0.02562 * 13 12 11 26 26 H 1.08002 * 119.98872 * 179.97438 * 14 13 12 27 27 H 0.97000 * 120.00243 * 0.02562 * 16 15 14 28 28 H 0.97003 * 120.00590 * 179.97438 * 16 15 14 29 29 H 1.08001 * 120.00802 * 179.74815 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3380 -5.2330 -0.0011 12 6 2.6266 -6.4348 -0.0019 13 6 2.3141 -7.7884 -0.0021 14 6 3.3238 -8.7305 -0.0023 15 6 4.6517 -8.3253 0.0028 16 7 5.6756 -9.2812 0.0081 17 6 4.9652 -6.9716 -0.0028 18 17 6.6256 -6.4648 -0.0026 19 6 3.9550 -6.0288 -0.0023 20 1 -0.4850 0.8402 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8724 -3.6048 0.8877 24 1 2.8711 -3.6040 -0.8922 25 1 1.2813 -8.1041 -0.0022 26 1 3.0803 -9.7827 -0.0020 27 1 5.4568 -10.2262 0.0079 28 1 6.6034 -8.9983 0.0113 29 1 4.1982 -4.9765 -0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085937876.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:18 Heat of formation + Delta-G solvation = -18.091603 kcal Electronic energy + Delta-G solvation = -13821.437525 eV Core-core repulsion = 11280.826748 eV Total energy + Delta-G solvation = -2540.610776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.34718 -37.42153 -35.83989 -35.51140 -33.06003 -31.72540 -29.71263 -27.36425 -24.19147 -23.49535 -22.75064 -18.81201 -18.68185 -17.95530 -17.81680 -16.54158 -15.96743 -15.70367 -15.48135 -15.26581 -14.87043 -14.75290 -14.28291 -13.66635 -13.13910 -13.00183 -12.70832 -12.52513 -12.45876 -12.35000 -11.98909 -11.95088 -11.71914 -11.34823 -11.00905 -10.60237 -9.88195 -9.46453 -8.23566 -7.93997 -6.36646 0.17935 0.32824 0.68871 1.10900 1.41213 1.44084 1.52264 1.67467 2.40411 2.61654 2.87254 3.09843 3.73728 4.14471 4.18048 4.27515 4.33085 4.45248 4.74398 4.83019 4.92494 5.06839 5.32580 5.35927 5.46883 5.61320 5.72356 6.10317 6.38854 6.76426 6.91159 7.32499 8.87935 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.029112 B = 0.004641 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.579919 B = 6031.624384 C = 6972.753705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.045 3.955 10 C -0.068 4.068 11 S -0.157 6.157 12 C -0.138 4.138 13 C -0.050 4.050 14 C -0.161 4.161 15 C 0.222 3.778 16 N -0.859 5.859 17 C -0.110 4.110 18 Cl -0.070 7.070 19 C -0.090 4.090 20 H 0.266 0.734 21 H 0.001 0.999 22 H 0.001 0.999 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.147 0.853 26 H 0.170 0.830 27 H 0.415 0.585 28 H 0.404 0.596 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.257 -19.999 0.007 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.007 3.993 10 C -0.217 4.217 11 S 0.087 5.913 12 C -0.253 4.253 13 C -0.074 4.074 14 C -0.185 4.185 15 C 0.113 3.887 16 N -0.401 5.401 17 C -0.144 4.144 18 Cl -0.041 7.041 19 C -0.115 4.115 20 H 0.075 0.925 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.165 0.835 26 H 0.188 0.812 27 H 0.247 0.753 28 H 0.234 0.766 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.005 -19.916 0.008 22.288 hybrid contribution 1.831 1.233 0.001 2.207 sum 11.836 -18.683 0.009 22.117 Atomic orbital electron populations 1.70098 1.07834 1.28142 1.50765 1.25985 0.95805 1.03388 0.94336 0.85432 0.78225 0.77721 0.79273 1.19063 1.20689 1.19072 1.21485 0.93655 0.91357 1.51829 0.91637 1.18670 0.93567 0.91080 0.96009 1.23587 1.00977 0.93024 1.04064 1.85440 1.13309 0.99618 1.92920 1.21529 0.95018 0.97635 1.11084 1.20888 1.00826 0.89469 0.96215 1.20792 0.88785 1.01130 1.07776 1.17587 0.90233 0.87088 0.93823 1.42554 1.06434 1.07424 1.83646 1.20262 0.85284 0.92702 1.16109 1.98327 1.17177 1.91139 1.97464 1.20924 0.91003 0.99418 1.00186 0.92507 0.98032 0.98023 0.90385 0.90377 0.83520 0.81229 0.75321 0.76619 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.23 15 2 C 0.00 0.21 5.46 84.66 0.46 0.67 15 3 Si 0.97 44.04 29.54 68.60 2.03 46.06 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 15 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 15 9 C 0.05 2.43 4.98 29.84 0.15 2.58 15 10 C -0.07 -2.95 4.27 71.98 0.31 -2.64 15 11 S -0.16 -5.90 21.92 -56.49 -1.24 -7.14 15 12 C -0.14 -4.29 6.11 22.59 0.14 -4.15 15 13 C -0.05 -1.20 9.78 22.40 0.22 -0.98 15 14 C -0.16 -2.98 9.89 22.38 0.22 -2.76 15 15 C 0.22 4.50 6.76 38.14 0.26 4.76 15 16 N -0.86 -11.18 9.06 -51.13 -0.46 -11.65 15 17 C -0.11 -2.84 6.33 22.43 0.14 -2.70 15 18 Cl -0.07 -1.62 27.58 -2.72 -0.08 -1.70 15 19 C -0.09 -2.76 9.14 22.42 0.20 -2.56 15 20 H 0.27 15.18 8.31 -92.70 -0.77 14.41 15 21 H 0.00 0.08 8.14 -2.38 -0.02 0.06 15 22 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 23 H 0.08 3.25 7.74 -2.39 -0.02 3.23 15 24 H 0.08 3.25 7.75 -2.39 -0.02 3.23 15 25 H 0.15 3.04 8.06 -2.91 -0.02 3.01 15 26 H 0.17 1.83 8.06 -2.91 -0.02 1.80 15 27 H 0.42 2.92 8.84 -92.71 -0.82 2.10 15 28 H 0.40 5.05 7.50 -92.71 -0.70 4.35 15 29 H 0.12 4.02 5.86 -2.91 -0.02 4.00 15 Total: -1.00 -65.38 280.68 2.54 -62.84 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -0.33 Total: 6.24 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 2.33 Total: -38.43 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.18 Total: -67.87 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -5.90 SS G_CDS: -1.24 Total: -7.14 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -65.38 2.54 -62.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085937876.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.747 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds