Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86803 * 119.99422 * 2 1 4 4 H 1.48504 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47349 * 299.99965 * 3 2 1 6 6 H 1.48496 * 109.47210 * 60.00180 * 3 2 1 7 7 C 1.39713 * 120.00595 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00301 * 186.16480 * 7 2 1 9 9 C 1.41157 * 120.00001 * 6.16000 * 7 2 1 10 10 C 1.37700 * 122.86595 * 174.03173 * 9 7 2 11 11 S 1.70989 * 108.84128 * 179.74930 * 10 9 7 12 12 C 1.75891 * 90.81049 * 0.29427 * 11 10 9 13 13 C 1.50702 * 124.99331 * 179.97438 * 12 11 10 14 14 H 1.09007 * 112.50503 * 170.03325 * 13 12 11 15 15 C 1.52877 * 113.16630 * 299.85550 * 13 12 11 16 16 C 1.51596 * 84.67269 * 115.28141 * 15 13 12 17 17 C 1.38951 * 145.53582 * 180.02562 * 16 15 13 18 18 C 1.37974 * 120.32506 * 179.97438 * 17 16 15 19 19 C 1.38246 * 120.17616 * 0.02562 * 18 17 16 20 20 C 1.38182 * 119.74690 * 359.97438 * 19 18 17 21 21 C 1.38236 * 120.12355 * 0.02562 * 20 19 18 22 22 N 1.28802 * 110.01641 * 359.70144 * 12 11 10 23 23 H 0.96993 * 120.00308 * 359.97438 * 1 2 3 24 24 H 1.07997 * 125.57568 * 0.02694 * 10 9 7 25 25 H 1.09005 * 113.99622 * 229.22865 * 15 13 12 26 26 H 1.09002 * 113.99226 * 1.33909 * 15 13 12 27 27 H 1.08002 * 119.83867 * 359.93315 * 17 16 15 28 28 H 1.08002 * 119.91237 * 180.02562 * 18 17 16 29 29 H 1.08001 * 120.12930 * 180.02562 * 19 18 17 30 30 H 1.08001 * 119.93357 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6179 0.0000 4 1 3.7041 1.3466 0.0006 5 1 1.8853 2.3965 -1.2124 6 1 1.8853 2.3965 1.2125 7 6 2.0089 -1.2099 0.0005 8 1 3.0843 -1.2125 0.1010 9 6 1.3094 -2.4289 -0.1301 10 6 1.9436 -3.6446 -0.2568 11 16 0.7616 -4.8737 -0.3827 12 6 -0.5264 -3.6815 -0.2666 13 6 -2.0000 -3.9950 -0.3022 14 1 -2.6162 -3.1341 -0.0423 15 6 -2.4383 -4.6792 -1.5971 16 6 -2.7586 -5.8582 -0.6996 17 6 -3.2421 -7.1598 -0.6470 18 6 -3.3248 -7.8240 0.5595 19 6 -2.9270 -7.1979 1.7261 20 6 -2.4453 -5.9035 1.6797 21 6 -2.3620 -5.2372 0.4714 22 7 -0.0251 -2.5017 -0.1410 23 1 -0.4850 0.8400 0.0004 24 1 3.0127 -3.7972 -0.2697 25 1 -3.3132 -4.2263 -2.0637 26 1 -1.6244 -4.8637 -2.2983 27 1 -3.5554 -7.6538 -1.5549 28 1 -3.7013 -8.8357 0.5927 29 1 -2.9917 -7.7186 2.6701 30 1 -2.1341 -5.4114 2.5893 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086490890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = 99.321619 kcal Electronic energy + Delta-G solvation = -15713.178722 eV Core-core repulsion = 13180.092215 eV Total energy + Delta-G solvation = -2533.086507 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30988 -37.70315 -35.37195 -33.10829 -30.61410 -29.42474 -27.11048 -25.63574 -24.80769 -22.35399 -21.06639 -19.88240 -18.74768 -17.55618 -16.35930 -15.37435 -15.12446 -15.05270 -14.46519 -14.19068 -13.23622 -13.22300 -12.84401 -12.50956 -12.27543 -11.87769 -11.63819 -11.55745 -11.19717 -11.16467 -10.74740 -10.67307 -10.43856 -10.02362 -9.65474 -9.27206 -8.62484 -8.42159 -8.01853 -7.96161 -7.31587 -6.54052 -4.34829 1.52564 1.59787 2.26116 2.93019 3.04026 3.10520 3.15815 3.70411 3.95808 4.01469 4.24033 4.44415 4.61480 5.07281 5.17308 5.18654 5.31559 5.53345 5.74553 5.82483 5.90144 5.92144 6.10259 6.26348 6.42407 6.56906 6.66556 6.78754 7.00334 7.11010 7.19192 7.26960 7.51303 8.20363 8.55107 8.89076 9.59162 10.34164 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.005490 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.103797 B = 5098.936885 C = 5317.737102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.433 4.433 8 H 0.084 0.916 9 C 0.224 3.776 10 C -0.455 4.455 11 S -0.026 6.026 12 C 0.064 3.936 13 C 0.043 3.957 14 H 0.114 0.886 15 C -0.066 4.066 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.082 4.082 21 C -0.110 4.110 22 N -0.393 5.393 23 H 0.273 0.727 24 H 0.137 0.863 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 -8.867 -0.244 11.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.150 4.150 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.102 0.898 9 C 0.102 3.898 10 C -0.594 4.594 11 S 0.222 5.778 12 C -0.219 4.219 13 C 0.020 3.980 14 H 0.132 0.868 15 C -0.104 4.104 16 C -0.121 4.121 17 C -0.120 4.120 18 C -0.141 4.141 19 C -0.139 4.139 20 C -0.100 4.100 21 C -0.111 4.111 22 N -0.106 5.106 23 H 0.084 0.916 24 H 0.155 0.845 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.787 -9.275 -0.281 12.114 hybrid contribution 1.090 1.528 0.199 1.887 sum -6.697 -7.748 -0.082 10.241 Atomic orbital electron populations 1.70115 1.07002 1.27902 1.32566 1.25981 0.94947 1.01041 0.93006 0.86227 0.80759 0.81082 0.78452 1.18498 1.19865 1.19941 1.18987 0.94513 0.88474 1.44778 0.89773 1.18009 0.85252 0.93167 0.93351 1.25169 1.01147 0.94652 1.38475 1.82705 1.01538 1.16483 1.77070 1.27226 0.97101 0.91037 1.06541 1.19491 0.90187 0.95520 0.92773 0.86770 1.21917 1.01604 0.90918 0.95963 1.22428 0.98336 0.94317 0.97021 1.20472 1.00419 0.93414 0.97742 1.20877 1.01198 0.99574 0.92405 1.20946 1.00193 0.94533 0.98265 1.20236 0.98946 0.94114 0.96678 1.21651 0.98349 0.97214 0.93889 1.67386 1.12483 1.19369 1.11400 0.91634 0.84529 0.88457 0.88373 0.86746 0.86152 0.85887 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.40 11.72 55.54 0.65 -19.75 16 2 C 0.07 1.90 5.49 -17.35 -0.10 1.80 16 3 Si 0.91 19.25 29.56 -169.99 -5.03 14.22 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.43 -12.12 9.23 -37.92 -0.35 -12.47 16 8 H 0.08 2.25 7.85 -52.48 -0.41 1.84 16 9 C 0.22 6.37 6.46 -86.16 -0.56 5.81 16 10 C -0.46 -11.96 10.98 30.54 0.34 -11.62 16 11 S -0.03 -0.59 22.76 -107.50 -2.45 -3.04 16 12 C 0.06 1.51 6.58 -13.55 -0.09 1.42 16 13 C 0.04 0.80 4.27 -96.61 -0.41 0.39 16 14 H 0.11 2.14 8.14 -51.93 -0.42 1.71 16 15 C -0.07 -1.03 8.01 -27.50 -0.22 -1.25 16 16 C -0.12 -1.87 7.32 -107.52 -0.79 -2.66 16 17 C -0.10 -1.37 10.05 -39.41 -0.40 -1.76 16 18 C -0.12 -1.51 10.03 -39.68 -0.40 -1.90 16 19 C -0.12 -1.58 10.06 -39.60 -0.40 -1.98 16 20 C -0.08 -1.27 10.04 -39.60 -0.40 -1.67 16 21 C -0.11 -1.88 6.70 -104.55 -0.70 -2.59 16 22 N -0.39 -10.75 8.49 -8.35 -0.07 -10.82 16 23 H 0.27 6.70 8.30 -40.82 -0.34 6.36 16 24 H 0.14 3.43 8.06 -52.49 -0.42 3.01 16 25 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.10 1.57 7.98 -51.93 -0.41 1.15 16 27 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 279.76 15.07 4.22 4.22 Total: -1.00 -30.55 279.76 -10.06 -40.61 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -2.92 Total: 3.03 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -4.47 Total: -28.47 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.58 Total: -30.57 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -2.45 Total: -3.04 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.55 -10.06 -40.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086490890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.936 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds