Wall clock time and date at job start Mon Mar 30 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86803 * 119.99422 * 2 1 4 4 H 1.48504 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47349 * 299.99965 * 3 2 1 6 6 H 1.48496 * 109.47210 * 60.00180 * 3 2 1 7 7 C 1.39713 * 120.00595 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00301 * 186.16480 * 7 2 1 9 9 C 1.41157 * 120.00001 * 6.16000 * 7 2 1 10 10 C 1.37700 * 122.86595 * 174.03173 * 9 7 2 11 11 S 1.70989 * 108.84128 * 179.74930 * 10 9 7 12 12 C 1.75891 * 90.81049 * 0.29427 * 11 10 9 13 13 C 1.50702 * 124.99331 * 179.97438 * 12 11 10 14 14 H 1.09007 * 112.50503 * 170.03325 * 13 12 11 15 15 C 1.52877 * 113.16630 * 299.85550 * 13 12 11 16 16 C 1.51596 * 84.67269 * 115.28141 * 15 13 12 17 17 C 1.38951 * 145.53582 * 180.02562 * 16 15 13 18 18 C 1.37974 * 120.32506 * 179.97438 * 17 16 15 19 19 C 1.38246 * 120.17616 * 0.02562 * 18 17 16 20 20 C 1.38182 * 119.74690 * 359.97438 * 19 18 17 21 21 C 1.38236 * 120.12355 * 0.02562 * 20 19 18 22 22 N 1.28802 * 110.01641 * 359.70144 * 12 11 10 23 23 H 0.96993 * 120.00308 * 359.97438 * 1 2 3 24 24 H 1.07997 * 125.57568 * 0.02694 * 10 9 7 25 25 H 1.09005 * 113.99622 * 229.22865 * 15 13 12 26 26 H 1.09002 * 113.99226 * 1.33909 * 15 13 12 27 27 H 1.08002 * 119.83867 * 359.93315 * 17 16 15 28 28 H 1.08002 * 119.91237 * 180.02562 * 18 17 16 29 29 H 1.08001 * 120.12930 * 180.02562 * 19 18 17 30 30 H 1.08001 * 119.93357 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6179 0.0000 4 1 3.7041 1.3466 0.0006 5 1 1.8853 2.3965 -1.2124 6 1 1.8853 2.3965 1.2125 7 6 2.0089 -1.2099 0.0005 8 1 3.0843 -1.2125 0.1010 9 6 1.3094 -2.4289 -0.1301 10 6 1.9436 -3.6446 -0.2568 11 16 0.7616 -4.8737 -0.3827 12 6 -0.5264 -3.6815 -0.2666 13 6 -2.0000 -3.9950 -0.3022 14 1 -2.6162 -3.1341 -0.0423 15 6 -2.4383 -4.6792 -1.5971 16 6 -2.7586 -5.8582 -0.6996 17 6 -3.2421 -7.1598 -0.6470 18 6 -3.3248 -7.8240 0.5595 19 6 -2.9270 -7.1979 1.7261 20 6 -2.4453 -5.9035 1.6797 21 6 -2.3620 -5.2372 0.4714 22 7 -0.0251 -2.5017 -0.1410 23 1 -0.4850 0.8400 0.0004 24 1 3.0127 -3.7972 -0.2697 25 1 -3.3132 -4.2263 -2.0637 26 1 -1.6244 -4.8637 -2.2983 27 1 -3.5554 -7.6538 -1.5549 28 1 -3.7013 -8.8357 0.5927 29 1 -2.9917 -7.7186 2.6701 30 1 -2.1341 -5.4114 2.5893 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086490890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:04 Heat of formation + Delta-G solvation = 82.845879 kcal Electronic energy + Delta-G solvation = -15713.893164 eV Core-core repulsion = 13180.092215 eV Total energy + Delta-G solvation = -2533.800949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.53551 -39.61088 -36.60433 -35.07234 -31.79576 -31.22052 -28.41118 -27.62440 -26.27124 -23.84596 -22.38624 -21.31463 -20.50083 -19.44553 -17.59212 -17.08185 -16.97888 -16.29648 -16.05512 -15.35836 -14.99321 -14.87777 -13.92314 -13.87503 -13.81099 -13.45418 -13.22330 -13.07618 -12.80343 -12.77284 -12.60604 -12.22640 -11.81562 -11.57839 -11.27015 -11.17833 -10.01045 -9.92125 -9.71602 -9.54615 -9.24923 -8.50101 -6.43095 0.32167 0.43679 0.50457 1.06605 1.36045 1.37591 1.52517 1.74423 2.21824 2.31028 2.85699 3.17076 3.38883 3.44229 3.63720 3.81787 4.24790 4.27687 4.44587 4.67210 4.75450 4.80867 4.87106 4.99596 5.02642 5.10439 5.21995 5.28690 5.47707 5.53394 5.62073 5.85030 6.11806 6.14801 6.50613 6.84074 7.62231 8.40367 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.005490 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.103797 B = 5098.936885 C = 5317.737102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.028 3.972 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.473 4.473 8 H 0.082 0.918 9 C 0.195 3.805 10 C -0.491 4.491 11 S 0.026 5.974 12 C 0.074 3.926 13 C 0.027 3.973 14 H 0.104 0.896 15 C -0.055 4.055 16 C -0.124 4.124 17 C -0.104 4.104 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.102 4.102 21 C -0.144 4.144 22 N -0.439 5.439 23 H 0.282 0.718 24 H 0.137 0.863 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.143 0.857 28 H 0.159 0.841 29 H 0.153 0.847 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 -10.334 -0.480 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.191 4.191 3 Si 0.812 3.188 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.507 4.507 8 H 0.101 0.899 9 C 0.073 3.927 10 C -0.629 4.629 11 S 0.275 5.725 12 C -0.210 4.210 13 C 0.005 3.995 14 H 0.122 0.878 15 C -0.093 4.093 16 C -0.124 4.124 17 C -0.122 4.122 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.120 4.120 21 C -0.145 4.145 22 N -0.154 5.154 23 H 0.092 0.908 24 H 0.155 0.845 25 H 0.142 0.858 26 H 0.109 0.891 27 H 0.161 0.839 28 H 0.177 0.823 29 H 0.171 0.829 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.003 -10.778 -0.517 14.053 hybrid contribution 1.372 1.821 0.313 2.302 sum -7.631 -8.957 -0.204 11.768 Atomic orbital electron populations 1.70199 1.08644 1.29465 1.32514 1.26937 0.95852 1.04523 0.91823 0.85015 0.79102 0.75644 0.79025 1.18132 1.18739 1.18794 1.19345 0.94800 0.89852 1.46670 0.89937 1.18451 0.86317 0.94148 0.93806 1.25409 1.02181 0.95884 1.39446 1.82262 0.99542 1.14374 1.76339 1.28112 0.99354 0.90408 1.03091 1.19755 0.87046 0.96593 0.96118 0.87772 1.21863 1.02256 0.90799 0.94371 1.22388 0.99048 0.95224 0.95721 1.20862 0.99365 0.92390 0.99543 1.21374 0.99249 1.00968 0.91421 1.21326 0.98751 0.93327 1.00177 1.20462 0.99990 0.95511 0.96018 1.21550 1.00961 0.96552 0.95456 1.67414 1.12221 1.21407 1.14320 0.90791 0.84532 0.85790 0.89059 0.83879 0.82295 0.82926 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.76 11.72 21.79 0.26 -43.50 16 2 C 0.03 1.49 5.49 85.17 0.47 1.96 16 3 Si 0.99 40.01 29.56 68.60 2.03 42.03 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.47 -27.57 9.23 23.34 0.22 -27.36 16 8 H 0.08 4.61 7.85 -2.91 -0.02 4.59 16 9 C 0.20 11.57 6.46 39.46 0.25 11.83 16 10 C -0.49 -26.75 10.98 67.69 0.74 -26.00 16 11 S 0.03 1.19 22.76 -56.49 -1.29 -0.09 16 12 C 0.07 3.55 6.58 88.55 0.58 4.13 16 13 C 0.03 1.04 4.27 -14.67 -0.06 0.98 16 14 H 0.10 4.09 8.14 -2.38 -0.02 4.07 16 15 C -0.06 -1.66 8.01 30.09 0.24 -1.42 16 16 C -0.12 -3.59 7.32 -21.74 -0.16 -3.75 16 17 C -0.10 -2.38 10.05 22.38 0.22 -2.16 16 18 C -0.11 -2.26 10.03 22.21 0.22 -2.04 16 19 C -0.12 -2.69 10.06 22.26 0.22 -2.47 16 20 C -0.10 -3.06 10.04 22.26 0.22 -2.84 16 21 C -0.14 -4.87 6.70 -19.82 -0.13 -5.00 16 22 N -0.44 -25.08 8.49 -180.34 -1.53 -26.61 16 23 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 24 H 0.14 7.18 8.06 -2.91 -0.02 7.15 16 25 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 26 H 0.09 2.85 7.98 -2.39 -0.02 2.83 16 27 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.11 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -68.94 279.76 3.67 -65.28 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.15 Total: 17.02 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 3.04 Total: -54.13 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -1.28 Total: -70.11 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -1.29 Total: -0.09 kcal Total: -68.94 3.67 -65.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086490890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.125 kcal (2) G-P(sol) polarization free energy of solvation -68.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds