Wall clock time and date at job start Mon Mar 30 2020 06:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86803 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46914 * 299.99845 * 3 2 1 6 6 H 1.48505 * 109.47107 * 59.99947 * 3 2 1 7 7 C 1.39716 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99897 * 186.16423 * 7 2 1 9 9 C 1.41155 * 120.00262 * 6.16446 * 7 2 1 10 10 C 1.37699 * 122.86619 * 174.03586 * 9 7 2 11 11 S 1.70992 * 108.83780 * 179.74584 * 10 9 7 12 12 C 1.75886 * 90.81044 * 0.28951 * 11 10 9 13 13 C 1.50707 * 124.98992 * 179.97438 * 12 11 10 14 14 H 1.08999 * 113.22927 * 192.17334 * 13 12 11 15 15 C 1.52882 * 113.98871 * 59.69679 * 13 12 11 16 16 C 1.50757 * 89.76321 * 246.05487 * 15 13 12 17 17 C 1.38241 * 149.34086 * 180.02562 * 16 15 13 18 18 C 1.38168 * 120.12667 * 179.97438 * 17 16 15 19 19 C 1.38246 * 119.74761 * 0.02562 * 18 17 16 20 20 C 1.37972 * 120.17606 * 359.96127 * 19 18 17 21 21 C 1.38357 * 90.25116 * 359.97438 * 16 15 13 22 22 N 1.28795 * 110.01721 * 359.70019 * 12 11 10 23 23 H 0.97001 * 120.00361 * 0.02562 * 1 2 3 24 24 H 1.08000 * 125.57569 * 0.02562 * 10 9 7 25 25 H 1.09005 * 113.16258 * 130.83127 * 15 13 12 26 26 H 1.08999 * 113.16720 * 1.28159 * 15 13 12 27 27 H 1.07999 * 119.93626 * 359.97438 * 17 16 15 28 28 H 1.07998 * 120.12732 * 179.72589 * 18 17 16 29 29 H 1.07998 * 119.91129 * 179.97438 * 19 18 17 30 30 H 1.08005 * 119.84206 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.7042 1.3464 0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3965 1.2125 7 6 2.0088 -1.2100 0.0005 8 1 3.0842 -1.2126 0.1010 9 6 1.3092 -2.4290 -0.1302 10 6 1.9434 -3.6446 -0.2568 11 16 0.7612 -4.8736 -0.3827 12 6 -0.5267 -3.6813 -0.2667 13 6 -2.0004 -3.9948 -0.3022 14 1 -2.6251 -3.1104 -0.4275 15 6 -2.4640 -4.9303 0.8146 16 6 -2.7835 -5.9872 -0.2119 17 6 -3.2502 -7.2541 -0.5087 18 6 -3.3009 -7.6849 -1.8205 19 6 -2.8826 -6.8442 -2.8352 20 6 -2.4169 -5.5794 -2.5402 21 6 -2.3645 -5.1406 -1.2229 22 7 -0.0253 -2.5016 -0.1410 23 1 -0.4851 0.8400 -0.0004 24 1 3.0124 -3.7973 -0.2696 25 1 -3.3450 -4.5646 1.3421 26 1 -1.6610 -5.2197 1.4925 27 1 -3.5758 -7.9085 0.2864 28 1 -3.6613 -8.6763 -2.0520 29 1 -2.9207 -7.1784 -3.8615 30 1 -2.0918 -4.9270 -3.3372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086490891.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:07 Heat of formation + Delta-G solvation = 99.194151 kcal Electronic energy + Delta-G solvation = -15697.342103 eV Core-core repulsion = 13164.250068 eV Total energy + Delta-G solvation = -2533.092035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30564 -37.71667 -35.37355 -33.11935 -30.62735 -29.45878 -27.10751 -25.63909 -24.81951 -22.31455 -21.07453 -19.89074 -18.75294 -17.57725 -16.36783 -15.38978 -15.12974 -15.06346 -14.48594 -14.18722 -13.26319 -13.20814 -12.79066 -12.57550 -12.31342 -11.84577 -11.63049 -11.55060 -11.24109 -11.16010 -10.77464 -10.65136 -10.34168 -10.11683 -9.66092 -9.27003 -8.62729 -8.42235 -8.03089 -7.96492 -7.32354 -6.54500 -4.35340 1.51522 1.59795 2.24032 2.91856 3.03683 3.10385 3.15669 3.69627 3.95100 4.01109 4.21005 4.46822 4.65708 5.04710 5.16943 5.17109 5.31296 5.52949 5.71661 5.83257 5.90222 5.92859 6.10006 6.25248 6.41299 6.56597 6.67189 6.78952 6.99367 7.10384 7.18701 7.26375 7.50422 8.19904 8.54500 8.88569 9.58245 10.33757 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.038826 B = 0.005456 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.984240 B = 5130.494424 C = 5341.867668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.433 4.433 8 H 0.084 0.916 9 C 0.224 3.776 10 C -0.455 4.455 11 S -0.024 6.024 12 C 0.067 3.933 13 C 0.040 3.960 14 H 0.121 0.879 15 C -0.062 4.062 16 C -0.123 4.123 17 C -0.095 4.095 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.088 4.088 21 C -0.110 4.110 22 N -0.392 5.392 23 H 0.273 0.727 24 H 0.137 0.863 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -8.804 -1.615 11.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.150 4.150 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.102 0.898 9 C 0.102 3.898 10 C -0.594 4.594 11 S 0.224 5.776 12 C -0.217 4.217 13 C 0.017 3.983 14 H 0.138 0.862 15 C -0.100 4.100 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.106 4.106 21 C -0.111 4.111 22 N -0.106 5.106 23 H 0.084 0.916 24 H 0.155 0.845 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.134 0.866 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.725 -9.209 -1.673 12.136 hybrid contribution 1.088 1.551 -0.076 1.896 sum -6.637 -7.658 -1.749 10.284 Atomic orbital electron populations 1.70112 1.07006 1.27916 1.32542 1.25981 0.94949 1.01047 0.93002 0.86227 0.80760 0.81075 0.78457 1.18494 1.19881 1.19916 1.18988 0.94518 0.88464 1.44775 0.89756 1.18001 0.85209 0.93176 0.93388 1.25181 1.01175 0.94680 1.38372 1.82721 1.01489 1.16435 1.76963 1.27061 0.96832 0.91085 1.06674 1.19502 0.90269 0.96150 0.92342 0.86152 1.21687 1.01553 0.90841 0.95962 1.21766 0.98333 0.94101 0.98160 1.20103 1.00726 0.94206 0.96310 1.20936 1.01003 0.99458 0.92447 1.20887 1.00314 0.93828 0.99114 1.20599 0.98689 0.95839 0.95503 1.22322 0.98425 0.96786 0.93575 1.67359 1.12501 1.19276 1.11433 0.91624 0.84500 0.89024 0.88921 0.86590 0.85960 0.86075 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.36 11.72 55.54 0.65 -19.71 16 2 C 0.07 1.90 5.49 -17.35 -0.10 1.80 16 3 Si 0.91 19.22 29.56 -169.99 -5.03 14.20 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.43 -12.09 9.23 -37.92 -0.35 -12.44 16 8 H 0.08 2.25 7.85 -52.48 -0.41 1.83 16 9 C 0.22 6.35 6.46 -86.17 -0.56 5.80 16 10 C -0.46 -11.92 10.98 30.54 0.34 -11.58 16 11 S -0.02 -0.55 22.70 -107.50 -2.44 -2.99 16 12 C 0.07 1.56 6.69 -13.55 -0.09 1.47 16 13 C 0.04 0.74 4.61 -92.62 -0.43 0.32 16 14 H 0.12 2.22 8.14 -51.93 -0.42 1.80 16 15 C -0.06 -0.97 7.62 -31.55 -0.24 -1.21 16 16 C -0.12 -1.90 7.60 -104.55 -0.79 -2.69 16 17 C -0.10 -1.26 10.04 -39.61 -0.40 -1.66 16 18 C -0.12 -1.47 10.06 -39.60 -0.40 -1.87 16 19 C -0.12 -1.61 10.03 -39.68 -0.40 -2.01 16 20 C -0.09 -1.38 10.05 -39.42 -0.40 -1.77 16 21 C -0.11 -1.87 6.42 -107.59 -0.69 -2.56 16 22 N -0.39 -10.70 8.49 -8.36 -0.07 -10.77 16 23 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 24 H 0.14 3.43 8.06 -52.49 -0.42 3.01 16 25 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.09 1.50 7.98 -51.93 -0.41 1.08 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 279.74 15.07 4.22 4.22 Total: -1.00 -30.41 279.74 -10.09 -40.49 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -2.92 Total: 3.00 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -4.50 Total: -28.43 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.58 Total: -30.49 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.44 Total: -2.99 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.41 -10.09 -40.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086490891.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.689 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds