Wall clock time and date at job start Mon Mar 30 2020 06:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86803 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46914 * 299.99845 * 3 2 1 6 6 H 1.48505 * 109.47107 * 59.99947 * 3 2 1 7 7 C 1.39716 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99897 * 186.16423 * 7 2 1 9 9 C 1.41155 * 120.00262 * 6.16446 * 7 2 1 10 10 C 1.37699 * 122.86619 * 174.03586 * 9 7 2 11 11 S 1.70992 * 108.83780 * 179.74584 * 10 9 7 12 12 C 1.75886 * 90.81044 * 0.28951 * 11 10 9 13 13 C 1.50707 * 124.98992 * 179.97438 * 12 11 10 14 14 H 1.08999 * 113.22927 * 192.17334 * 13 12 11 15 15 C 1.52882 * 113.98871 * 59.69679 * 13 12 11 16 16 C 1.50757 * 89.76321 * 246.05487 * 15 13 12 17 17 C 1.38241 * 149.34086 * 180.02562 * 16 15 13 18 18 C 1.38168 * 120.12667 * 179.97438 * 17 16 15 19 19 C 1.38246 * 119.74761 * 0.02562 * 18 17 16 20 20 C 1.37972 * 120.17606 * 359.96127 * 19 18 17 21 21 C 1.38357 * 90.25116 * 359.97438 * 16 15 13 22 22 N 1.28795 * 110.01721 * 359.70019 * 12 11 10 23 23 H 0.97001 * 120.00361 * 0.02562 * 1 2 3 24 24 H 1.08000 * 125.57569 * 0.02562 * 10 9 7 25 25 H 1.09005 * 113.16258 * 130.83127 * 15 13 12 26 26 H 1.08999 * 113.16720 * 1.28159 * 15 13 12 27 27 H 1.07999 * 119.93626 * 359.97438 * 17 16 15 28 28 H 1.07998 * 120.12732 * 179.72589 * 18 17 16 29 29 H 1.07998 * 119.91129 * 179.97438 * 19 18 17 30 30 H 1.08005 * 119.84206 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.7042 1.3464 0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3965 1.2125 7 6 2.0088 -1.2100 0.0005 8 1 3.0842 -1.2126 0.1010 9 6 1.3092 -2.4290 -0.1302 10 6 1.9434 -3.6446 -0.2568 11 16 0.7612 -4.8736 -0.3827 12 6 -0.5267 -3.6813 -0.2667 13 6 -2.0004 -3.9948 -0.3022 14 1 -2.6251 -3.1104 -0.4275 15 6 -2.4640 -4.9303 0.8146 16 6 -2.7835 -5.9872 -0.2119 17 6 -3.2502 -7.2541 -0.5087 18 6 -3.3009 -7.6849 -1.8205 19 6 -2.8826 -6.8442 -2.8352 20 6 -2.4169 -5.5794 -2.5402 21 6 -2.3645 -5.1406 -1.2229 22 7 -0.0253 -2.5016 -0.1410 23 1 -0.4851 0.8400 -0.0004 24 1 3.0124 -3.7973 -0.2696 25 1 -3.3450 -4.5646 1.3421 26 1 -1.6610 -5.2197 1.4925 27 1 -3.5758 -7.9085 0.2864 28 1 -3.6613 -8.6763 -2.0520 29 1 -2.9207 -7.1784 -3.8615 30 1 -2.0918 -4.9270 -3.3372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086490891.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:07 Heat of formation + Delta-G solvation = 82.885220 kcal Electronic energy + Delta-G solvation = -15698.049312 eV Core-core repulsion = 13164.250068 eV Total energy + Delta-G solvation = -2533.799243 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.52753 -39.62504 -36.60183 -35.07995 -31.82158 -31.23514 -28.42760 -27.62151 -26.27405 -23.80751 -22.40061 -21.30483 -20.50623 -19.46831 -17.58429 -17.09953 -16.98722 -16.30871 -16.06312 -15.35553 -14.99334 -14.88488 -13.94943 -13.92163 -13.81199 -13.45818 -13.15334 -13.07957 -12.84523 -12.75216 -12.61695 -12.23670 -11.79644 -11.58092 -11.29410 -11.16927 -10.01202 -9.91820 -9.71408 -9.55258 -9.25441 -8.50197 -6.43175 0.31031 0.41706 0.51207 1.05797 1.36082 1.37510 1.52581 1.74040 2.21811 2.30065 2.84873 3.21610 3.39801 3.40762 3.65089 3.78546 4.23501 4.27866 4.43040 4.68018 4.74249 4.83340 4.84385 4.99261 5.02057 5.10205 5.20911 5.28731 5.47415 5.52963 5.62083 5.84438 6.11501 6.14795 6.50446 6.83989 7.61694 8.40308 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.038826 B = 0.005456 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.984240 B = 5130.494424 C = 5341.867668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.028 3.972 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.472 4.472 8 H 0.083 0.917 9 C 0.195 3.805 10 C -0.490 4.490 11 S 0.027 5.973 12 C 0.077 3.923 13 C 0.022 3.978 14 H 0.113 0.887 15 C -0.052 4.052 16 C -0.126 4.126 17 C -0.096 4.096 18 C -0.109 4.109 19 C -0.122 4.122 20 C -0.108 4.108 21 C -0.142 4.142 22 N -0.438 5.438 23 H 0.282 0.718 24 H 0.137 0.863 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.162 0.838 29 H 0.150 0.850 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -10.311 -1.874 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.191 4.191 3 Si 0.812 3.188 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.506 4.506 8 H 0.101 0.899 9 C 0.073 3.927 10 C -0.629 4.629 11 S 0.276 5.724 12 C -0.207 4.207 13 C -0.001 4.001 14 H 0.131 0.869 15 C -0.090 4.090 16 C -0.126 4.126 17 C -0.114 4.114 18 C -0.127 4.127 19 C -0.139 4.139 20 C -0.127 4.127 21 C -0.143 4.143 22 N -0.153 5.153 23 H 0.092 0.908 24 H 0.155 0.845 25 H 0.135 0.865 26 H 0.103 0.897 27 H 0.164 0.836 28 H 0.180 0.820 29 H 0.168 0.832 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.949 -10.752 -1.932 14.121 hybrid contribution 1.369 1.856 -0.052 2.307 sum -7.580 -8.896 -1.984 11.854 Atomic orbital electron populations 1.70196 1.08642 1.29470 1.32499 1.26935 0.95853 1.04521 0.91828 0.85018 0.79114 0.75656 0.79016 1.18117 1.18916 1.18641 1.19347 0.94815 0.89828 1.46647 0.89896 1.18442 0.86270 0.94156 0.93838 1.25417 1.02202 0.95894 1.39353 1.82282 0.99538 1.14370 1.76252 1.27921 0.99058 0.90465 1.03226 1.19674 0.87242 0.97301 0.95843 0.86906 1.21575 1.02143 0.90188 0.95046 1.21792 0.99062 0.94893 0.96827 1.20527 0.99620 0.93423 0.97853 1.21440 0.98932 1.00728 0.91554 1.21259 0.98981 0.92607 1.01080 1.20797 0.99793 0.97259 0.94809 1.22161 1.01029 0.96353 0.94767 1.67385 1.12240 1.21274 1.14354 0.90787 0.84489 0.86476 0.89735 0.83625 0.82024 0.83220 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.68 11.72 21.79 0.26 -43.43 16 2 C 0.03 1.49 5.49 85.17 0.47 1.96 16 3 Si 0.99 39.96 29.56 68.60 2.03 41.99 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.47 -27.49 9.23 23.34 0.22 -27.27 16 8 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.20 11.56 6.46 39.46 0.25 11.82 16 10 C -0.49 -26.67 10.98 67.69 0.74 -25.92 16 11 S 0.03 1.22 22.70 -56.49 -1.28 -0.06 16 12 C 0.08 3.68 6.69 88.56 0.59 4.27 16 13 C 0.02 0.83 4.61 -12.09 -0.06 0.77 16 14 H 0.11 4.37 8.14 -2.39 -0.02 4.35 16 15 C -0.05 -1.57 7.62 27.47 0.21 -1.36 16 16 C -0.13 -3.62 7.60 -19.82 -0.15 -3.77 16 17 C -0.10 -2.18 10.04 22.25 0.22 -1.96 16 18 C -0.11 -2.16 10.06 22.25 0.22 -1.94 16 19 C -0.12 -2.78 10.03 22.21 0.22 -2.56 16 20 C -0.11 -3.27 10.05 22.38 0.22 -3.05 16 21 C -0.14 -4.76 6.42 -21.79 -0.14 -4.90 16 22 N -0.44 -24.96 8.49 -180.35 -1.53 -26.49 16 23 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 24 H 0.14 7.18 8.06 -2.91 -0.02 7.16 16 25 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 26 H 0.08 2.68 7.98 -2.39 -0.02 2.66 16 27 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 28 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 29 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.11 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -68.59 279.74 3.66 -64.94 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.15 Total: 16.94 kcal Atomic # 6 Polarization: -56.93 SS G_CDS: 3.03 Total: -53.90 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -1.28 Total: -69.91 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.28 Total: -0.06 kcal Total: -68.59 3.66 -64.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086490891.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.825 kcal (2) G-P(sol) polarization free energy of solvation -68.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds