Wall clock time and date at job start Mon Mar 30 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31025 * 1 3 3 Si 1.86802 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47062 * 264.51235 * 3 2 1 5 5 H 1.48497 * 109.46921 * 24.50924 * 3 2 1 6 6 H 1.48491 * 109.47226 * 144.51095 * 3 2 1 7 7 C 1.39718 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99649 * 349.84806 * 7 2 1 9 9 C 1.41156 * 120.00063 * 169.84812 * 7 2 1 10 10 C 1.37694 * 122.86210 * 172.53381 * 9 7 2 11 11 S 1.70994 * 108.83837 * 180.02562 * 10 9 7 12 12 C 1.75894 * 90.80941 * 359.97438 * 11 10 9 13 13 C 1.50700 * 124.99217 * 180.02562 * 12 11 10 14 14 H 1.08993 * 109.42615 * 194.87175 * 13 12 11 15 15 C 1.53344 * 109.42518 * 74.97603 * 13 12 11 16 16 S 1.81964 * 108.35215 * 179.56984 * 15 13 12 17 17 C 1.81959 * 101.80019 * 50.76752 * 16 15 13 18 18 C 1.53342 * 108.35671 * 309.23153 * 17 16 15 19 19 O 1.42520 * 109.72499 * 60.35242 * 18 17 16 20 20 N 1.28794 * 110.01661 * 0.02562 * 12 11 10 21 21 H 0.97008 * 119.99807 * 0.02562 * 1 2 3 22 22 H 1.08004 * 125.58548 * 0.03600 * 10 9 7 23 23 H 1.08995 * 109.68646 * 299.28601 * 15 13 12 24 24 H 1.08995 * 109.68236 * 59.85649 * 15 13 12 25 25 H 1.09001 * 109.68722 * 68.95133 * 17 16 15 26 26 H 1.09008 * 109.68594 * 189.48027 * 17 16 15 27 27 H 1.08999 * 109.42672 * 180.43037 * 18 17 16 28 28 H 1.08995 * 109.42905 * 300.27604 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.6077 1.9795 -1.3937 5 1 1.3885 2.6833 0.5808 6 1 3.4790 1.4765 0.8128 7 6 2.0088 -1.2100 -0.0005 8 1 1.4814 -2.1380 0.1639 9 6 3.4038 -1.2195 -0.2160 10 6 4.1729 -2.3537 -0.0816 11 16 5.8015 -1.9602 -0.4231 12 6 5.3586 -0.2859 -0.7302 13 6 6.3213 0.8042 -1.1251 14 1 5.8430 1.7749 -0.9951 15 6 6.7199 0.6247 -2.5950 16 16 7.8704 1.9611 -3.0439 17 6 9.0987 1.8600 -1.7053 18 6 8.3534 1.8595 -0.3651 19 8 7.4814 0.7341 -0.3001 20 7 4.0907 -0.1283 -0.5678 21 1 -0.4850 0.8401 -0.0004 22 1 3.8074 -3.3319 0.1943 23 1 7.2084 -0.3405 -2.7277 24 1 5.8321 0.6773 -3.2251 25 1 9.6757 0.9407 -1.8050 26 1 9.7667 2.7200 -1.7542 27 1 9.0745 1.8070 0.4506 28 1 7.7702 2.7758 -0.2742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086990474.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:50 Heat of formation + Delta-G solvation = -31.487606 kcal Electronic energy + Delta-G solvation = -14897.715758 eV Core-core repulsion = 12358.567793 eV Total energy + Delta-G solvation = -2539.147964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.028 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58820 -39.54536 -35.43914 -33.80068 -31.76769 -30.91024 -28.15763 -26.21639 -24.21817 -22.72865 -21.10140 -20.04040 -18.35968 -17.53913 -17.24177 -17.18944 -16.65680 -15.98394 -15.56164 -15.20653 -14.79589 -14.75680 -14.47603 -13.88502 -13.79591 -13.04701 -12.88312 -12.73674 -12.66877 -12.39961 -12.31771 -11.81786 -11.37668 -11.34974 -10.77360 -10.26515 -9.99725 -9.59559 -8.91429 -8.84519 -6.59056 -0.03148 0.55008 0.73912 1.29020 1.32744 1.38092 1.45712 1.59404 1.91141 2.26496 2.37090 3.14185 3.40354 3.46011 3.76563 3.86210 4.13662 4.23889 4.36854 4.50196 4.60587 4.69081 4.81225 4.91452 4.99576 5.35807 5.90803 6.00186 6.38709 6.51315 7.11735 8.13384 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.007774 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.301714 B = 3600.917588 C = 4184.309853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.049 3.951 3 Si 1.025 2.975 4 H -0.274 1.274 5 H -0.306 1.306 6 H -0.268 1.268 7 C -0.453 4.453 8 H 0.067 0.933 9 C 0.188 3.812 10 C -0.453 4.453 11 S 0.139 5.861 12 C 0.061 3.939 13 C 0.179 3.821 14 H 0.087 0.913 15 C -0.099 4.099 16 S -0.274 6.274 17 C -0.109 4.109 18 C 0.052 3.948 19 O -0.385 6.385 20 N -0.502 5.502 21 H 0.294 0.706 22 H 0.150 0.850 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.677 5.878 -2.882 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.167 4.167 3 Si 0.856 3.144 4 H -0.200 1.200 5 H -0.237 1.237 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.086 0.914 9 C 0.066 3.934 10 C -0.593 4.593 11 S 0.389 5.611 12 C -0.219 4.219 13 C 0.116 3.884 14 H 0.105 0.895 15 C -0.248 4.248 16 S -0.046 6.046 17 C -0.256 4.256 18 C -0.025 4.025 19 O -0.304 6.304 20 N -0.224 5.224 21 H 0.104 0.896 22 H 0.168 0.832 23 H 0.124 0.876 24 H 0.131 0.869 25 H 0.122 0.878 26 H 0.164 0.836 27 H 0.159 0.841 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.103 6.410 -3.764 20.498 hybrid contribution -1.585 -0.518 1.002 1.945 sum 17.518 5.892 -2.763 18.687 Atomic orbital electron populations 1.69748 1.08955 1.31560 1.37366 1.26803 0.95519 1.04790 0.89604 0.84312 0.76288 0.74177 0.79627 1.19992 1.23685 1.19457 1.18800 0.89647 0.95317 1.44983 0.91436 1.18072 0.94610 0.86051 0.94679 1.25592 0.97157 1.03860 1.32642 1.82334 1.07279 1.04218 1.67230 1.27340 0.93173 0.97841 1.03565 1.20275 0.84341 0.94589 0.89220 0.89526 1.24035 1.02243 1.01169 0.97386 1.87112 1.29940 1.46777 1.40784 1.24323 0.98590 1.08853 0.93875 1.23173 0.92867 0.88656 0.97797 1.87717 1.33717 1.44266 1.64679 1.66021 1.06495 1.31043 1.18853 0.89575 0.83193 0.87607 0.86944 0.87757 0.83635 0.84107 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.62 13.94 21.79 0.30 -48.31 15 2 C 0.05 2.77 5.51 85.17 0.47 3.24 15 3 Si 1.03 49.87 25.63 68.60 1.76 51.63 15 4 H -0.27 -13.10 7.11 99.48 0.71 -12.39 15 5 H -0.31 -14.01 7.11 99.48 0.71 -13.30 15 6 H -0.27 -13.26 6.44 99.48 0.64 -12.62 15 7 C -0.45 -26.73 9.79 23.34 0.23 -26.50 15 8 H 0.07 4.20 8.06 -2.91 -0.02 4.18 15 9 C 0.19 10.10 6.21 39.45 0.25 10.34 15 10 C -0.45 -21.67 10.98 67.69 0.74 -20.92 15 11 S 0.14 5.33 23.04 -56.49 -1.30 4.03 15 12 C 0.06 2.50 6.50 88.55 0.58 3.08 15 13 C 0.18 5.76 3.02 29.96 0.09 5.85 15 14 H 0.09 2.89 7.97 -2.39 -0.02 2.87 15 15 C -0.10 -2.70 6.00 72.10 0.43 -2.27 15 16 S -0.27 -6.25 22.41 -56.49 -1.27 -7.51 15 17 C -0.11 -1.65 6.74 72.10 0.49 -1.17 15 18 C 0.05 0.93 6.68 72.10 0.48 1.41 15 19 O -0.38 -10.65 10.00 -148.98 -1.49 -12.14 15 20 N -0.50 -24.82 5.37 -180.35 -0.97 -25.79 15 21 H 0.29 15.22 8.30 -92.70 -0.77 14.45 15 22 H 0.15 6.94 8.06 -2.91 -0.02 6.92 15 23 H 0.11 2.72 8.14 -2.39 -0.02 2.70 15 24 H 0.11 3.25 8.14 -2.39 -0.02 3.23 15 25 H 0.10 1.48 8.14 -2.39 -0.02 1.46 15 26 H 0.15 1.39 8.14 -2.38 -0.02 1.37 15 27 H 0.14 1.66 8.14 -2.39 -0.02 1.64 15 28 H 0.07 1.25 7.97 -2.39 -0.02 1.23 15 Total: -1.00 -65.21 263.54 1.89 -63.32 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.10 Total: 1.73 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 3.75 Total: -26.93 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -0.67 Total: -74.11 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.49 Total: -12.14 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 1.76 Total: 51.63 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.57 Total: -3.49 kcal Total: -65.21 1.89 -63.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086990474.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.827 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds