Wall clock time and date at job start Mon Mar 30 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48502 * 109.46875 * 269.99741 * 3 2 1 5 5 H 1.48495 * 109.46877 * 30.00094 * 3 2 1 6 6 H 1.48495 * 109.46684 * 150.00259 * 3 2 1 7 7 C 1.39722 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00634 * 186.15523 * 7 2 1 9 9 C 1.41167 * 119.99883 * 6.15645 * 7 2 1 10 10 C 1.37690 * 122.86151 * 174.03277 * 9 7 2 11 11 S 1.70997 * 108.83787 * 179.74120 * 10 9 7 12 12 C 1.75894 * 90.80902 * 0.29682 * 11 10 9 13 13 C 1.50702 * 124.99088 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.38362 * 164.56092 * 13 12 11 15 15 C 1.53343 * 109.42751 * 284.42948 * 13 12 11 16 16 S 1.81963 * 108.35517 * 180.43253 * 15 13 12 17 17 C 1.81963 * 101.79713 * 309.23750 * 16 15 13 18 18 C 1.53344 * 108.35852 * 50.76654 * 17 16 15 19 19 O 1.42517 * 109.72600 * 299.64607 * 18 17 16 20 20 N 1.28792 * 110.01270 * 359.69396 * 12 11 10 21 21 H 0.97006 * 119.99860 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.58323 * 359.94252 * 10 9 7 23 23 H 1.08994 * 109.68681 * 300.14973 * 15 13 12 24 24 H 1.09002 * 109.68020 * 60.67829 * 15 13 12 25 25 H 1.09003 * 109.68819 * 291.04854 * 17 16 15 26 26 H 1.09000 * 109.68493 * 170.48419 * 17 16 15 27 27 H 1.08997 * 109.42588 * 59.72188 * 18 17 16 28 28 H 1.08997 * 109.42912 * 179.57109 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7000 6 1 3.5417 1.4401 0.7000 7 6 2.0088 -1.2100 -0.0005 8 1 3.0841 -1.2129 0.0997 9 6 1.3090 -2.4290 -0.1322 10 6 1.9432 -3.6445 -0.2600 11 16 0.7609 -4.8734 -0.3866 12 6 -0.5269 -3.6811 -0.2695 13 6 -2.0006 -3.9945 -0.3051 14 1 -2.5624 -3.1329 0.0557 15 6 -2.4202 -4.3102 -1.7458 16 16 -4.2037 -4.6710 -1.7571 17 6 -4.3410 -5.9104 -0.4320 18 6 -3.6414 -5.3614 0.8173 19 8 -2.2667 -5.1177 0.5308 20 7 -0.0254 -2.5016 -0.1429 21 1 -0.4850 0.8401 0.0004 22 1 3.0122 -3.7971 -0.2743 23 1 -2.2152 -3.4512 -2.3846 24 1 -1.8673 -5.1771 -2.1075 25 1 -3.8600 -6.8372 -0.7447 26 1 -5.3919 -6.0977 -0.2119 27 1 -4.1192 -4.4298 1.1204 28 1 -3.7199 -6.0882 1.6257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086990476.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:53 Heat of formation + Delta-G solvation = -4.887204 kcal Electronic energy + Delta-G solvation = -14751.073736 eV Core-core repulsion = 12213.079251 eV Total energy + Delta-G solvation = -2537.994484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.028 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.77158 -37.59185 -33.41336 -32.13820 -30.54029 -28.81863 -25.67774 -24.57134 -23.00968 -21.13793 -19.04304 -17.82842 -16.81807 -16.08080 -15.59246 -15.19594 -15.02001 -14.33319 -14.21231 -13.89189 -13.33973 -12.76725 -12.52349 -12.01463 -11.73217 -11.59271 -11.33957 -11.22367 -11.01413 -10.73949 -10.45637 -10.08363 -9.68688 -9.58257 -9.28776 -8.13176 -8.06024 -7.68687 -7.40023 -6.57570 -4.38936 1.69055 2.12071 2.47573 2.86432 3.03184 3.09130 3.12669 3.63703 3.65180 3.98840 4.25174 4.65388 4.92981 5.02740 5.19126 5.27666 5.30336 5.46178 5.58653 5.68614 5.80638 6.06071 6.63133 7.03886 7.18398 7.30293 7.44230 8.15718 8.49791 8.84493 9.49796 10.30959 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.006342 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.017028 B = 4413.881918 C = 4965.175535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.085 0.915 9 C 0.224 3.776 10 C -0.451 4.451 11 S -0.002 6.002 12 C 0.050 3.950 13 C 0.182 3.818 14 H 0.096 0.904 15 C -0.097 4.097 16 S -0.268 6.268 17 C -0.119 4.119 18 C 0.062 3.938 19 O -0.372 6.372 20 N -0.385 5.385 21 H 0.274 0.726 22 H 0.140 0.860 23 H 0.120 0.880 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 -6.928 -0.484 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.150 4.150 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.102 3.898 10 C -0.591 4.591 11 S 0.246 5.754 12 C -0.234 4.234 13 C 0.119 3.881 14 H 0.113 0.887 15 C -0.246 4.246 16 S -0.040 6.040 17 C -0.268 4.268 18 C -0.017 4.017 19 O -0.290 6.290 20 N -0.101 5.101 21 H 0.085 0.915 22 H 0.157 0.843 23 H 0.138 0.862 24 H 0.114 0.886 25 H 0.111 0.889 26 H 0.130 0.870 27 H 0.085 0.915 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.995 -7.052 -1.136 11.486 hybrid contribution 1.693 1.186 0.634 2.162 sum -7.302 -5.866 -0.502 9.380 Atomic orbital electron populations 1.70096 1.07023 1.28117 1.32406 1.25982 0.94960 1.01079 0.92975 0.86257 0.80307 0.80641 0.79172 1.19442 1.20214 1.18637 1.18958 0.94534 0.88397 1.44844 0.89661 1.17967 0.84904 0.93258 0.93669 1.25277 1.01412 0.94735 1.37644 1.82686 1.00894 1.16056 1.75782 1.26930 0.96522 0.91735 1.08190 1.20246 0.90498 0.89143 0.88256 0.88669 1.24193 0.92825 1.06680 1.00883 1.86938 1.12598 1.54667 1.49830 1.24178 1.05288 1.00205 0.97116 1.22766 0.82342 1.01246 0.95321 1.87762 1.24172 1.48502 1.68542 1.67307 1.12711 1.19160 1.10947 0.91502 0.84257 0.86185 0.88620 0.88918 0.86967 0.91535 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.19 11.72 55.54 0.65 -19.54 15 2 C 0.07 1.87 5.49 -17.34 -0.10 1.78 15 3 Si 0.91 19.06 29.56 -169.99 -5.03 14.03 15 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 7 C -0.43 -11.92 9.23 -37.92 -0.35 -12.27 15 8 H 0.09 2.23 7.85 -52.49 -0.41 1.82 15 9 C 0.22 6.26 6.46 -86.16 -0.56 5.70 15 10 C -0.45 -11.57 10.98 30.53 0.34 -11.23 15 11 S 0.00 -0.05 23.03 -107.50 -2.48 -2.53 15 12 C 0.05 1.17 6.51 -13.55 -0.09 1.08 15 13 C 0.18 3.42 3.02 -27.71 -0.08 3.34 15 14 H 0.10 1.86 7.97 -51.93 -0.41 1.44 15 15 C -0.10 -1.58 6.00 37.33 0.22 -1.36 15 16 S -0.27 -3.80 22.42 -107.50 -2.41 -6.21 15 17 C -0.12 -1.33 6.74 37.34 0.25 -1.08 15 18 C 0.06 0.76 6.68 37.34 0.25 1.01 15 19 O -0.37 -6.36 9.99 -35.23 -0.35 -6.71 15 20 N -0.39 -10.39 8.49 -8.35 -0.07 -10.46 15 21 H 0.27 6.69 8.30 -40.82 -0.34 6.35 15 22 H 0.14 3.39 8.06 -52.49 -0.42 2.97 15 23 H 0.12 2.04 8.14 -51.93 -0.42 1.62 15 24 H 0.10 1.54 8.14 -51.93 -0.42 1.12 15 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.11 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.07 0.80 7.97 -51.93 -0.41 0.39 15 28 H 0.11 1.03 8.14 -51.93 -0.42 0.61 15 LS Contribution 268.48 15.07 4.05 4.05 Total: -1.00 -29.68 268.48 -8.66 -38.34 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.91 Total: 2.06 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.11 Total: -13.03 kcal Atomic # 7 Polarization: -30.58 SS G_CDS: 0.58 Total: -30.00 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.35 Total: -6.71 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -4.89 Total: -8.73 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.68 -8.66 -38.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086990476.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.450 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds