Wall clock time and date at job start Mon Mar 30 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48502 * 109.46875 * 269.99741 * 3 2 1 5 5 H 1.48495 * 109.46877 * 30.00094 * 3 2 1 6 6 H 1.48495 * 109.46684 * 150.00259 * 3 2 1 7 7 C 1.39722 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00634 * 186.15523 * 7 2 1 9 9 C 1.41167 * 119.99883 * 6.15645 * 7 2 1 10 10 C 1.37690 * 122.86151 * 174.03277 * 9 7 2 11 11 S 1.70997 * 108.83787 * 179.74120 * 10 9 7 12 12 C 1.75894 * 90.80902 * 0.29682 * 11 10 9 13 13 C 1.50702 * 124.99088 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.38362 * 164.56092 * 13 12 11 15 15 C 1.53343 * 109.42751 * 284.42948 * 13 12 11 16 16 S 1.81963 * 108.35517 * 180.43253 * 15 13 12 17 17 C 1.81963 * 101.79713 * 309.23750 * 16 15 13 18 18 C 1.53344 * 108.35852 * 50.76654 * 17 16 15 19 19 O 1.42517 * 109.72600 * 299.64607 * 18 17 16 20 20 N 1.28792 * 110.01270 * 359.69396 * 12 11 10 21 21 H 0.97006 * 119.99860 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.58323 * 359.94252 * 10 9 7 23 23 H 1.08994 * 109.68681 * 300.14973 * 15 13 12 24 24 H 1.09002 * 109.68020 * 60.67829 * 15 13 12 25 25 H 1.09003 * 109.68819 * 291.04854 * 17 16 15 26 26 H 1.09000 * 109.68493 * 170.48419 * 17 16 15 27 27 H 1.08997 * 109.42588 * 59.72188 * 18 17 16 28 28 H 1.08997 * 109.42912 * 179.57109 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7000 6 1 3.5417 1.4401 0.7000 7 6 2.0088 -1.2100 -0.0005 8 1 3.0841 -1.2129 0.0997 9 6 1.3090 -2.4290 -0.1322 10 6 1.9432 -3.6445 -0.2600 11 16 0.7609 -4.8734 -0.3866 12 6 -0.5269 -3.6811 -0.2695 13 6 -2.0006 -3.9945 -0.3051 14 1 -2.5624 -3.1329 0.0557 15 6 -2.4202 -4.3102 -1.7458 16 16 -4.2037 -4.6710 -1.7571 17 6 -4.3410 -5.9104 -0.4320 18 6 -3.6414 -5.3614 0.8173 19 8 -2.2667 -5.1177 0.5308 20 7 -0.0254 -2.5016 -0.1429 21 1 -0.4850 0.8401 0.0004 22 1 3.0122 -3.7971 -0.2743 23 1 -2.2152 -3.4512 -2.3846 24 1 -1.8673 -5.1771 -2.1075 25 1 -3.8600 -6.8372 -0.7447 26 1 -5.3919 -6.0977 -0.2119 27 1 -4.1192 -4.4298 1.1204 28 1 -3.7199 -6.0882 1.6257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086990476.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:53 Heat of formation + Delta-G solvation = -23.709565 kcal Electronic energy + Delta-G solvation = -14751.889935 eV Core-core repulsion = 12213.079251 eV Total energy + Delta-G solvation = -2538.810683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.028 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27200 -39.30720 -35.28794 -33.58372 -31.69235 -30.64323 -27.66257 -26.09036 -24.19167 -22.77916 -20.87556 -19.68257 -18.15320 -17.43694 -17.08743 -16.98813 -16.54693 -15.80695 -15.41345 -15.17079 -14.88125 -14.42679 -14.11954 -13.68378 -13.44438 -12.97630 -12.80607 -12.64197 -12.61784 -12.27842 -12.21986 -11.59122 -11.29601 -11.21148 -10.73032 -10.01794 -9.96158 -9.34921 -8.81356 -8.49665 -6.42396 0.22875 0.60444 1.02532 1.33817 1.37488 1.40311 1.52085 1.71508 2.18829 2.22644 2.48028 3.36587 3.53509 3.62580 3.81045 3.94097 4.16406 4.31996 4.40572 4.65043 4.70151 4.76009 4.82838 5.06338 5.25724 5.43253 6.01139 6.14535 6.49843 6.84128 7.56679 8.40859 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.006342 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.017028 B = 4413.881918 C = 4965.175535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.029 3.971 3 Si 0.991 3.009 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.194 3.806 10 C -0.481 4.481 11 S 0.052 5.948 12 C 0.052 3.948 13 C 0.190 3.810 14 H 0.083 0.917 15 C -0.093 4.093 16 S -0.273 6.273 17 C -0.108 4.108 18 C 0.053 3.947 19 O -0.388 6.388 20 N -0.428 5.428 21 H 0.282 0.718 22 H 0.142 0.858 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.147 0.853 27 H 0.069 0.931 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.988 -7.601 -0.258 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.190 4.190 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.506 4.506 8 H 0.103 0.897 9 C 0.072 3.928 10 C -0.620 4.620 11 S 0.302 5.698 12 C -0.232 4.232 13 C 0.126 3.874 14 H 0.101 0.899 15 C -0.243 4.243 16 S -0.045 6.045 17 C -0.256 4.256 18 C -0.025 4.025 19 O -0.307 6.307 20 N -0.145 5.145 21 H 0.092 0.908 22 H 0.160 0.840 23 H 0.124 0.876 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.165 0.835 27 H 0.087 0.913 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.170 -7.765 -0.911 12.828 hybrid contribution 1.932 1.219 0.608 2.364 sum -8.238 -6.546 -0.303 10.527 Atomic orbital electron populations 1.70181 1.08605 1.29523 1.32591 1.26904 0.95828 1.04457 0.91851 0.85078 0.78853 0.75519 0.79453 1.18733 1.19007 1.18123 1.19319 0.94890 0.89711 1.46690 0.89683 1.18396 0.85919 0.94253 0.94272 1.25545 1.02555 0.95821 1.38068 1.82274 0.98875 1.13868 1.74833 1.27761 0.98828 0.91301 1.05322 1.20111 0.87524 0.89642 0.90082 0.89889 1.23958 0.95208 1.06257 0.98829 1.86982 1.09802 1.56145 1.51610 1.24313 1.07347 0.99036 0.94892 1.23137 0.80010 1.02432 0.96878 1.87714 1.27418 1.47277 1.68285 1.67317 1.12524 1.21096 1.13530 0.90803 0.83988 0.87557 0.88383 0.87969 0.83541 0.91315 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.02 11.72 21.79 0.26 -42.77 15 2 C 0.03 1.52 5.49 85.17 0.47 1.98 15 3 Si 0.99 39.36 29.56 68.60 2.03 41.39 15 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 15 5 H -0.27 -9.96 7.11 99.48 0.71 -9.26 15 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 7 C -0.47 -26.83 9.23 23.35 0.22 -26.62 15 8 H 0.09 4.61 7.85 -2.91 -0.02 4.59 15 9 C 0.19 11.20 6.46 39.46 0.25 11.45 15 10 C -0.48 -25.23 10.98 67.69 0.74 -24.49 15 11 S 0.05 2.34 23.03 -56.49 -1.30 1.03 15 12 C 0.05 2.44 6.51 88.55 0.58 3.02 15 13 C 0.19 7.10 3.02 29.96 0.09 7.19 15 14 H 0.08 3.28 7.97 -2.39 -0.02 3.26 15 15 C -0.09 -3.01 6.00 72.10 0.43 -2.57 15 16 S -0.27 -7.21 22.42 -56.49 -1.27 -8.48 15 17 C -0.11 -2.02 6.74 72.10 0.49 -1.53 15 18 C 0.05 1.14 6.68 72.10 0.48 1.63 15 19 O -0.39 -12.61 9.99 -148.98 -1.49 -14.10 15 20 N -0.43 -23.78 8.49 -180.34 -1.53 -25.31 15 21 H 0.28 13.92 8.30 -92.70 -0.77 13.15 15 22 H 0.14 7.12 8.06 -2.91 -0.02 7.10 15 23 H 0.11 3.68 8.14 -2.39 -0.02 3.67 15 24 H 0.10 3.07 8.14 -2.39 -0.02 3.05 15 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 15 26 H 0.15 1.82 8.14 -2.39 -0.02 1.80 15 27 H 0.07 1.49 7.97 -2.39 -0.02 1.47 15 28 H 0.14 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -65.64 268.48 1.61 -64.02 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.17 Total: 14.16 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 3.75 Total: -29.94 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -1.28 Total: -68.08 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.49 Total: -14.10 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -2.57 Total: -7.45 kcal Total: -65.64 1.61 -64.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086990476.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.315 kcal (2) G-P(sol) polarization free energy of solvation -65.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds