Wall clock time and date at job start Mon Mar 30 2020 06:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31039 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48492 * 109.47255 * 274.98563 * 3 2 1 5 5 H 1.48500 * 109.47176 * 34.98651 * 3 2 1 6 6 H 1.48503 * 109.47214 * 154.98101 * 3 2 1 7 7 C 1.39299 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00266 * 173.89953 * 7 2 1 9 9 N 1.37170 * 120.00231 * 354.17635 * 7 2 1 10 10 N 1.28749 * 123.57904 * 5.40298 * 9 7 2 11 11 C 1.32334 * 108.86820 * 179.86478 * 10 9 7 12 12 C 1.40545 * 136.48605 * 180.02562 * 11 10 9 13 13 C 1.36003 * 119.50101 * 180.35799 * 12 11 10 14 14 Cl 1.73601 * 119.15065 * 179.97438 * 13 12 11 15 15 C 1.39798 * 121.69977 * 0.02562 * 13 12 11 16 16 Cl 1.73601 * 119.15353 * 179.97438 * 15 13 12 17 17 C 1.36003 * 121.69480 * 359.97438 * 15 13 12 18 18 C 1.40540 * 119.50349 * 0.02994 * 17 15 13 19 19 N 1.28749 * 123.58596 * 185.69689 * 9 7 2 20 20 H 0.97005 * 119.99546 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.25060 * 0.34530 * 12 11 10 22 22 H 1.08005 * 120.24877 * 180.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.3866 2.1072 -1.3947 5 1 1.4986 2.6199 0.8028 6 1 3.5907 1.4120 0.5921 7 6 2.0068 -1.2064 -0.0005 8 1 3.0823 -1.2091 -0.0999 9 7 1.3263 -2.3913 0.1195 10 7 0.0417 -2.4762 0.1357 11 6 -0.3015 -3.7483 0.2592 12 6 -1.5005 -4.4776 0.3359 13 6 -1.4542 -5.8300 0.4721 14 17 -2.9406 -6.7218 0.5667 15 6 -0.2404 -6.5204 0.5391 16 17 -0.2584 -8.2475 0.7140 17 6 0.9541 -5.8739 0.4708 18 6 0.9773 -4.4758 0.3299 19 7 1.9042 -3.5362 0.2333 20 1 -0.4850 0.8401 0.0004 21 1 -2.4515 -3.9680 0.2872 22 1 1.8780 -6.4307 0.5245 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107838883.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:03 Heat of formation + Delta-G solvation = 90.996249 kcal Electronic energy + Delta-G solvation = -14046.591099 eV Core-core repulsion = 11269.293583 eV Total energy + Delta-G solvation = -2777.297517 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 256.982 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.83872 -39.24628 -37.40981 -37.12782 -35.70626 -33.63813 -32.35927 -30.96018 -28.30263 -25.02027 -23.84818 -21.92172 -20.23571 -19.19653 -17.67292 -17.22985 -17.16785 -16.59889 -15.62537 -15.16464 -14.69517 -14.24936 -13.87217 -13.82009 -13.30291 -13.03823 -12.85642 -12.20889 -12.09317 -12.03326 -11.79422 -11.62519 -11.40253 -11.16892 -11.08608 -9.84001 -9.00615 -8.92973 -6.92951 -0.29549 0.44584 0.91194 1.24645 1.34813 1.37380 1.62716 1.84787 2.01119 2.61022 2.64426 2.76628 3.20153 3.85421 3.99967 4.36297 4.57728 4.74587 4.92125 5.01327 5.32544 5.37582 5.72003 5.76503 6.10888 6.81683 7.91531 8.06085 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.047696 B = 0.005553 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.914069 B = 5041.043809 C = 5614.847917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.004 3.996 3 Si 1.041 2.959 4 H -0.253 1.253 5 H -0.262 1.262 6 H -0.242 1.242 7 C -0.288 4.288 8 H 0.159 0.841 9 N 0.102 4.898 10 N -0.336 5.336 11 C -0.039 4.039 12 C -0.054 4.054 13 C -0.046 4.046 14 Cl -0.049 7.049 15 C -0.038 4.038 16 Cl -0.047 7.047 17 C -0.060 4.060 18 C -0.014 4.014 19 N -0.421 5.421 20 H 0.301 0.699 21 H 0.144 0.856 22 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 -3.610 0.603 3.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.218 4.218 3 Si 0.856 3.144 4 H -0.177 1.177 5 H -0.186 1.186 6 H -0.164 1.164 7 C -0.435 4.435 8 H 0.177 0.823 9 N 0.220 4.780 10 N -0.186 5.186 11 C -0.179 4.179 12 C -0.077 4.077 13 C -0.077 4.077 14 Cl -0.021 7.021 15 C -0.070 4.070 16 Cl -0.018 7.018 17 C -0.083 4.083 18 C -0.154 4.154 19 N -0.271 5.271 20 H 0.113 0.887 21 H 0.162 0.838 22 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.504 -2.911 0.540 3.003 hybrid contribution -0.503 -0.442 0.060 0.672 sum -1.007 -3.353 0.600 3.552 Atomic orbital electron populations 1.70229 1.08946 1.32033 1.27157 1.27400 0.96769 1.04697 0.92904 0.84271 0.78475 0.71543 0.80153 1.17683 1.18572 1.16423 1.21542 0.95340 0.78543 1.48040 0.82332 1.44661 1.01361 1.05788 1.26222 1.75315 0.95937 1.16387 1.30993 1.22059 0.96109 0.91009 1.08692 1.19352 0.95555 0.90801 1.02023 1.19658 0.86579 0.91043 1.10404 1.98316 1.31984 1.74787 1.96980 1.19673 0.92207 0.85490 1.09600 1.98319 1.98868 1.08349 1.96269 1.19360 0.97511 0.88650 1.02782 1.21595 0.90591 0.95659 1.07506 1.74389 1.24826 0.91795 1.36071 0.88718 0.83791 0.82913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -36.62 11.71 21.71 0.25 -36.37 14 2 C 0.00 0.17 5.49 85.07 0.47 0.64 14 3 Si 1.04 31.22 29.56 68.60 2.03 33.24 14 4 H -0.25 -7.18 7.11 99.48 0.71 -6.48 14 5 H -0.26 -7.53 7.11 99.48 0.71 -6.83 14 6 H -0.24 -6.73 7.11 99.48 0.71 -6.02 14 7 C -0.29 -14.04 10.41 84.11 0.88 -13.16 14 8 H 0.16 6.84 7.84 -2.91 -0.02 6.82 14 9 N 0.10 5.61 4.01 -53.82 -0.22 5.40 14 10 N -0.34 -18.83 9.72 -48.83 -0.47 -19.31 14 11 C -0.04 -2.01 7.61 42.02 0.32 -1.69 14 12 C -0.05 -2.30 9.80 22.31 0.22 -2.08 14 13 C -0.05 -1.72 6.27 22.13 0.14 -1.58 14 14 Cl -0.05 -1.53 27.77 -2.72 -0.08 -1.61 14 15 C -0.04 -1.42 6.27 22.13 0.14 -1.28 14 16 Cl -0.05 -1.41 27.77 -2.72 -0.08 -1.48 14 17 C -0.06 -2.42 9.80 22.31 0.22 -2.20 14 18 C -0.01 -0.68 7.61 42.02 0.32 -0.36 14 19 N -0.42 -22.46 11.96 -48.83 -0.58 -23.04 14 20 H 0.30 12.72 8.30 -92.70 -0.77 11.95 14 21 H 0.14 5.66 8.06 -2.91 -0.02 5.63 14 22 H 0.15 5.40 8.06 -2.91 -0.02 5.38 14 Total: -1.00 -59.27 239.32 4.83 -54.43 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.28 Total: 10.46 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 2.70 Total: -21.72 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -1.02 Total: -73.32 kcal Atomic # 14 Polarization: 31.22 SS G_CDS: 2.03 Total: 33.24 kcal Atomic # 17 Polarization: -2.94 SS G_CDS: -0.15 Total: -3.09 kcal Total: -59.27 4.83 -54.43 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107838883.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.430 kcal (2) G-P(sol) polarization free energy of solvation -59.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds