Wall clock time and date at job start Mon Mar 30 2020 06:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 O 1.45194 * 109.46979 * 239.99809 * 2 1 3 13 13 C 1.34892 * 117.00027 * 90.00527 * 12 2 1 14 14 O 1.21625 * 120.00110 * 359.97438 * 13 12 2 15 15 C 1.46481 * 120.00328 * 180.02562 * 13 12 2 16 16 C 1.38000 * 126.23979 * 179.69228 * 15 13 12 17 17 C 1.39834 * 107.08963 * 179.84451 * 16 15 13 18 18 Cl 1.73590 * 126.06757 * 180.15221 * 17 16 15 19 19 C 1.35558 * 107.86548 * 0.41572 * 17 16 15 20 20 N 1.35598 * 108.87431 * 359.73886 * 19 17 16 21 21 C 1.46496 * 125.67955 * 179.97438 * 20 19 17 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 26 26 H 1.07997 * 126.45140 * 359.97438 * 16 15 13 27 27 H 1.08003 * 125.56260 * 179.72370 * 19 17 16 28 28 H 1.08997 * 109.47140 * 270.04282 * 21 20 19 29 29 H 1.08996 * 109.47007 * 30.04129 * 21 20 19 30 30 H 1.09000 * 109.47147 * 150.04025 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 8 2.0140 -0.6845 -1.1855 13 6 2.2182 0.0677 -2.2865 14 8 1.9971 1.2632 -2.2558 15 6 2.7053 -0.5556 -3.5194 16 6 2.9518 0.0864 -4.7158 17 6 3.4046 -0.8827 -5.6165 18 17 3.8616 -0.6084 -7.2685 19 6 3.4178 -2.0753 -4.9723 20 7 2.9950 -1.8899 -3.6973 21 6 2.8672 -2.9352 -2.6789 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7094 1.1619 3.4844 26 1 2.8217 1.1393 -4.9177 27 1 3.7161 -3.0192 -5.4041 28 1 1.8667 -3.3654 -2.7234 29 1 3.6064 -3.7147 -2.8636 30 1 3.0335 -2.5033 -1.6921 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695048.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:26 Heat of formation + Delta-G solvation = -66.673431 kcal Electronic energy + Delta-G solvation = -16786.475267 eV Core-core repulsion = 13801.004953 eV Total energy + Delta-G solvation = -2985.470314 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.54289 -40.81879 -37.62714 -37.39774 -35.35782 -33.73625 -31.91379 -30.43802 -27.51839 -27.40315 -25.15110 -22.70598 -21.71097 -20.86278 -19.14816 -18.58994 -17.87123 -17.14258 -16.80265 -16.12455 -16.02915 -15.21501 -14.88533 -14.62252 -14.36629 -14.04568 -13.89598 -13.76693 -13.32870 -13.19295 -12.87747 -12.78327 -12.43307 -12.36555 -12.16496 -11.85882 -11.67298 -11.62433 -11.02620 -10.60721 -9.81066 -9.35887 -8.28766 -6.46257 0.11978 1.10333 1.37081 1.42577 1.46430 1.54156 1.70828 2.00721 2.10618 2.41876 3.02574 3.69095 3.91940 4.03182 4.21967 4.45623 4.49098 4.61066 4.75769 4.78210 4.79899 4.92213 5.10558 5.29928 5.45670 5.57688 5.64204 5.85845 5.99488 6.04555 6.57764 6.85430 7.24994 8.78964 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.042769 B = 0.004690 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.528955 B = 5968.642177 C = 6347.868269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.219 3.781 3 H 0.005 0.995 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.261 1.261 12 O -0.351 6.351 13 C 0.521 3.479 14 O -0.547 6.547 15 C -0.056 4.056 16 C -0.099 4.099 17 C -0.144 4.144 18 Cl -0.037 7.037 19 C 0.072 3.928 20 N -0.405 5.405 21 C 0.059 3.941 22 H 0.019 0.981 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.271 0.729 26 H 0.151 0.849 27 H 0.227 0.773 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -10.265 -13.945 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.023 0.977 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.185 1.185 12 O -0.267 6.267 13 C 0.368 3.632 14 O -0.439 6.439 15 C -0.166 4.166 16 C -0.126 4.126 17 C -0.176 4.176 18 Cl -0.008 7.008 19 C -0.067 4.067 20 N -0.079 5.079 21 C -0.081 4.081 22 H 0.039 0.961 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.169 0.831 27 H 0.244 0.756 28 H 0.111 0.889 29 H 0.149 0.851 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.910 -10.032 -13.544 17.556 hybrid contribution -0.045 0.538 0.777 0.946 sum 4.865 -9.494 -12.768 16.638 Atomic orbital electron populations 1.21989 0.96747 1.00523 1.00710 1.20403 0.92001 0.92171 0.78869 0.97683 1.21227 1.33520 1.14026 0.89496 0.90859 1.25841 0.94672 0.95620 1.02202 1.70017 1.36557 1.23670 1.25314 0.85220 0.78725 0.78708 0.76681 1.19372 1.20591 1.18502 1.86568 1.76470 1.42645 1.21031 1.20285 0.74203 0.84899 0.83780 1.90817 1.51094 1.17091 1.84850 1.19270 1.18147 0.85471 0.93726 1.21247 1.01323 1.00163 0.89870 1.19877 1.14734 0.94490 0.88478 1.98316 1.91395 1.96541 1.14579 1.22477 1.01343 1.00323 0.82592 1.44284 1.45935 1.06409 1.11229 1.22640 1.05671 0.89426 0.90335 0.96148 0.93232 0.90025 0.92004 0.83094 0.75627 0.88901 0.85112 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.26 9.33 71.98 0.67 -6.59 16 2 C 0.22 11.84 2.57 29.85 0.08 11.92 16 3 H 0.01 0.33 7.16 -2.39 -0.02 0.31 16 4 C -0.55 -29.81 8.90 25.60 0.23 -29.58 16 5 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -52.09 11.32 21.45 0.24 -51.85 16 8 Si 0.98 41.49 29.54 68.60 2.03 43.52 16 9 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 10 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 12 O -0.35 -16.40 7.29 -58.06 -0.42 -16.82 16 13 C 0.52 23.33 7.89 69.97 0.55 23.88 16 14 O -0.55 -28.08 16.15 19.43 0.31 -27.77 16 15 C -0.06 -1.94 6.88 40.32 0.28 -1.66 16 16 C -0.10 -3.08 10.65 22.60 0.24 -2.84 16 17 C -0.14 -3.47 6.65 22.04 0.15 -3.33 16 18 Cl -0.04 -0.76 29.30 -2.72 -0.08 -0.84 16 19 C 0.07 1.41 11.36 83.49 0.95 2.36 16 20 N -0.41 -10.41 3.16 -534.24 -1.69 -12.10 16 21 C 0.06 1.22 10.57 127.77 1.35 2.57 16 22 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.08 4.49 6.07 -2.39 -0.01 4.47 16 25 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.15 4.71 8.06 -2.91 -0.02 4.68 16 27 H 0.23 2.15 8.06 -2.91 -0.02 2.12 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 2.33 6.15 -2.39 -0.01 2.31 16 Total: -1.00 -67.32 282.37 6.49 -60.83 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.16 Total: 6.96 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 4.94 Total: -1.94 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -1.45 Total: -63.95 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.11 Total: -44.59 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -67.32 6.49 -60.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695048.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.839 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds