Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46975 * 2 1 4 4 C 1.50692 * 109.47447 * 240.00140 * 2 1 3 5 5 H 1.08000 * 119.99856 * 240.00257 * 4 2 1 6 6 C 1.37874 * 120.00488 * 59.99698 * 4 2 1 7 7 N 1.31515 * 119.99857 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00167 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47375 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.46932 * 120.00359 * 8 6 4 11 11 H 1.48502 * 109.47022 * 240.00051 * 8 6 4 12 12 O 1.45205 * 109.46813 * 119.99677 * 2 1 3 13 13 C 1.34897 * 116.99641 * 270.00231 * 12 2 1 14 14 O 1.21616 * 120.00442 * 359.97438 * 13 12 2 15 15 C 1.46487 * 119.99465 * 180.02562 * 13 12 2 16 16 C 1.37995 * 126.23347 * 180.02562 * 15 13 12 17 17 C 1.39834 * 107.08825 * 179.97438 * 16 15 13 18 18 Cl 1.73599 * 126.07078 * 179.97438 * 17 16 15 19 19 C 1.35559 * 107.86303 * 359.73210 * 17 16 15 20 20 N 1.35590 * 108.87657 * 0.43276 * 19 17 16 21 21 C 1.46499 * 125.68140 * 179.82368 * 20 19 17 22 22 H 1.08999 * 109.47055 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47737 * 300.00284 * 1 2 3 24 24 H 1.09000 * 109.47009 * 60.00115 * 1 2 3 25 25 H 0.96997 * 120.00259 * 179.97438 * 7 6 4 26 26 H 1.08002 * 126.46091 * 359.95611 * 16 15 13 27 27 H 1.08001 * 125.56220 * 180.26112 * 19 17 16 28 28 H 1.09002 * 109.47391 * 269.69418 * 21 20 19 29 29 H 1.09001 * 109.46813 * 149.69474 * 21 20 19 30 30 H 1.09004 * 109.47041 * 29.69601 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1467 -2.2869 -3.6036 10 1 1.1663 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 8 2.0139 -0.6844 1.1857 13 6 2.2179 0.0679 2.2866 14 8 1.9976 1.2635 2.2556 15 6 2.7060 -0.5552 3.5192 16 6 2.9576 0.0878 4.7140 17 6 3.4055 -0.8821 5.6163 18 17 3.8630 -0.6076 7.2682 19 6 3.4139 -2.0756 4.9736 20 7 2.9966 -1.8893 3.6970 21 6 2.8701 -2.9345 2.6783 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7096 1.1617 -3.4844 26 1 2.8325 1.1417 4.9144 27 1 3.7079 -3.0202 5.4068 28 1 3.8076 -3.0221 2.1292 29 1 2.0678 -2.6738 1.9880 30 1 2.6408 -3.8852 3.1597 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = -66.734435 kcal Electronic energy + Delta-G solvation = -16786.704716 eV Core-core repulsion = 13801.231757 eV Total energy + Delta-G solvation = -2985.472959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.54404 -40.81957 -37.62862 -37.39715 -35.36071 -33.73628 -31.91500 -30.43915 -27.50694 -27.41931 -25.15213 -22.70617 -21.71035 -20.86774 -19.15061 -18.58222 -17.87391 -17.15277 -16.80640 -16.11762 -16.03072 -15.21804 -14.89039 -14.62255 -14.33822 -14.07344 -13.93356 -13.74021 -13.30198 -13.22169 -12.90393 -12.77435 -12.41069 -12.39383 -12.14154 -11.85574 -11.67638 -11.62078 -11.01358 -10.62154 -9.81171 -9.35887 -8.29375 -6.46525 0.11991 1.10293 1.37165 1.42516 1.43350 1.56236 1.71010 2.00788 2.10467 2.41540 3.02175 3.68940 3.91866 4.03170 4.21932 4.45506 4.49072 4.60944 4.75595 4.77957 4.79009 4.93051 5.10392 5.29932 5.45895 5.57647 5.64111 5.85876 5.99416 6.04445 6.58049 6.85448 7.24851 8.78841 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.042768 B = 0.004690 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.541557 B = 5968.560098 C = 6347.723315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.218 3.782 3 H 0.005 0.995 4 C -0.543 4.543 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.279 1.279 12 O -0.351 6.351 13 C 0.521 3.479 14 O -0.546 6.546 15 C -0.056 4.056 16 C -0.099 4.099 17 C -0.144 4.144 18 Cl -0.037 7.037 19 C 0.072 3.928 20 N -0.405 5.405 21 C 0.059 3.941 22 H 0.049 0.951 23 H 0.020 0.980 24 H 0.081 0.919 25 H 0.271 0.729 26 H 0.151 0.849 27 H 0.227 0.773 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -10.288 14.023 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.023 0.977 4 C -0.581 4.581 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.183 1.183 10 H -0.198 1.198 11 H -0.205 1.205 12 O -0.267 6.267 13 C 0.368 3.632 14 O -0.438 6.438 15 C -0.166 4.166 16 C -0.126 4.126 17 C -0.176 4.176 18 Cl -0.008 7.008 19 C -0.067 4.067 20 N -0.079 5.079 21 C -0.080 4.080 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.169 0.831 27 H 0.244 0.756 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.772 -10.061 13.625 17.596 hybrid contribution -0.006 0.563 -0.806 0.983 sum 4.766 -9.498 12.819 16.651 Atomic orbital electron populations 1.21990 0.96714 1.00554 1.00732 1.20412 0.92020 0.92184 0.78884 0.97674 1.21282 1.33344 1.13941 0.89484 0.90892 1.25842 0.94698 0.95636 1.02211 1.70031 1.36651 1.23722 1.25186 0.85116 0.78288 0.78439 0.77444 1.18313 1.19784 1.20503 1.86573 1.76558 1.42584 1.21014 1.20284 0.74205 0.84895 0.83778 1.90815 1.51081 1.17070 1.84873 1.19270 1.18149 0.85485 0.93717 1.21247 1.01326 1.00151 0.89871 1.19879 1.14792 0.94449 0.88463 1.98317 1.91375 1.96539 1.14600 1.22476 1.01347 1.00367 0.82539 1.44282 1.46014 1.06438 1.11125 1.22634 1.05142 0.89702 0.90524 0.93188 0.96123 0.90027 0.92019 0.83089 0.75625 0.89197 0.89833 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.26 9.33 71.98 0.67 -6.59 16 2 C 0.22 11.81 2.57 29.84 0.08 11.89 16 3 H 0.01 0.34 7.16 -2.38 -0.02 0.32 16 4 C -0.54 -29.72 8.90 25.60 0.23 -29.49 16 5 H 0.07 3.83 7.81 -2.91 -0.02 3.80 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -52.08 11.32 21.45 0.24 -51.84 16 8 Si 0.98 41.58 29.54 68.60 2.03 43.61 16 9 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 12 O -0.35 -16.40 7.30 -58.11 -0.42 -16.83 16 13 C 0.52 23.32 7.89 69.97 0.55 23.87 16 14 O -0.55 -28.06 16.15 19.45 0.31 -27.74 16 15 C -0.06 -1.94 6.88 40.32 0.28 -1.66 16 16 C -0.10 -3.08 10.65 22.60 0.24 -2.84 16 17 C -0.14 -3.47 6.66 22.04 0.15 -3.32 16 18 Cl -0.04 -0.76 29.30 -2.72 -0.08 -0.84 16 19 C 0.07 1.41 11.36 83.49 0.95 2.36 16 20 N -0.41 -10.41 3.16 -534.22 -1.69 -12.10 16 21 C 0.06 1.23 10.57 127.77 1.35 2.58 16 22 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 4.48 6.07 -2.39 -0.01 4.47 16 25 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.15 4.71 8.06 -2.91 -0.02 4.68 16 27 H 0.23 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 2.30 6.15 -2.39 -0.01 2.28 16 30 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -67.41 282.37 6.49 -60.93 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.16 Total: 6.72 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 4.94 Total: -1.90 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -1.45 Total: -63.94 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -0.11 Total: -44.57 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -67.41 6.49 -60.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.809 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds