Wall clock time and date at job start Mon Mar 30 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47135 * 270.00591 * 3 2 1 5 5 H 1.48498 * 109.47174 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.47034 * 150.00542 * 3 2 1 7 7 C 1.39884 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00039 * 163.09866 * 7 2 1 9 9 C 1.41363 * 119.99983 * 343.08716 * 7 2 1 10 10 C 1.41061 * 120.05701 * 154.49590 * 9 7 2 11 11 C 1.36212 * 120.37608 * 179.97438 * 10 9 7 12 12 C 1.39225 * 120.32359 * 359.97438 * 11 10 9 13 13 O 1.35062 * 133.65026 * 180.02562 * 12 11 10 14 14 C 1.34247 * 108.23272 * 180.02562 * 13 12 11 15 15 C 1.50701 * 124.80492 * 180.02562 * 14 13 12 16 16 F 1.39904 * 109.47071 * 269.96296 * 15 14 13 17 17 F 1.39900 * 109.47170 * 29.95957 * 15 14 13 18 18 F 1.39902 * 109.47507 * 149.96082 * 15 14 13 19 19 N 1.29864 * 110.39005 * 0.02562 * 14 13 12 20 20 C 1.36175 * 108.76284 * 359.97438 * 19 14 13 21 21 C 1.39004 * 133.69966 * 179.97438 * 20 19 14 22 22 H 0.96998 * 119.99490 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.81471 * 0.26218 * 10 9 7 24 24 H 1.08003 * 119.83621 * 180.02562 * 11 10 9 25 25 H 1.08002 * 120.30432 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4401 0.6999 7 6 2.0082 -1.2115 -0.0005 8 1 3.0532 -1.2316 -0.2725 9 6 1.3471 -2.4094 0.3551 10 6 1.8180 -3.6472 -0.1307 11 6 1.1864 -4.8054 0.2082 12 6 0.0691 -4.7798 1.0386 13 8 -0.7450 -5.7359 1.5358 14 6 -1.6794 -5.1397 2.2932 15 6 -2.7794 -5.8611 3.0285 16 9 -3.9020 -5.9676 2.2005 17 9 -2.3405 -7.1405 3.3858 18 9 -3.1170 -5.1449 4.1820 19 7 -1.5012 -3.8534 2.3025 20 6 -0.4176 -3.5558 1.5334 21 6 0.2204 -2.3692 1.1911 22 1 -0.4849 0.8401 0.0004 23 1 2.6870 -3.6771 -0.7713 24 1 1.5546 -5.7483 -0.1684 25 1 -0.1467 -1.4252 1.5662 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113932426.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:47 Heat of formation + Delta-G solvation = -118.263868 kcal Electronic energy + Delta-G solvation = -18323.699784 eV Core-core repulsion = 14660.735356 eV Total energy + Delta-G solvation = -3662.964428 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.19621 -47.72520 -47.69413 -42.34718 -37.09111 -34.15187 -33.68402 -30.13023 -29.46749 -26.99280 -25.22923 -22.12404 -21.64980 -20.87861 -18.62927 -18.61234 -18.26848 -17.80675 -16.48417 -15.89274 -15.80153 -14.82244 -14.50893 -14.45463 -14.10547 -13.83921 -13.82881 -13.81700 -13.02492 -13.00045 -12.51106 -12.12919 -11.72966 -11.28219 -11.21302 -10.90923 -10.75497 -10.51400 -10.25429 -9.66751 -9.35756 -7.83825 -7.55959 -6.99024 -4.63013 1.35944 2.02746 2.40484 2.94808 2.98228 3.03202 3.12507 3.12876 3.60617 3.77682 4.26932 4.36205 4.40880 5.25216 5.51417 5.67668 5.98628 6.21970 6.36634 6.69479 6.91299 7.07540 7.19305 7.36120 7.51183 7.74974 8.02633 8.35917 8.53791 8.56819 9.96143 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.037830 B = 0.005494 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.980424 B = 5095.012610 C = 5596.247408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.452 4.452 8 H 0.087 0.913 9 C 0.098 3.902 10 C -0.144 4.144 11 C -0.083 4.083 12 C -0.078 4.078 13 O -0.203 6.203 14 C 0.103 3.897 15 C 0.586 3.414 16 F -0.161 7.161 17 F -0.163 7.163 18 F -0.149 7.149 19 N -0.414 5.414 20 C 0.039 3.961 21 C -0.124 4.124 22 H 0.287 0.713 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 -5.746 2.645 6.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.480 4.480 8 H 0.105 0.895 9 C 0.094 3.906 10 C -0.163 4.163 11 C -0.102 4.102 12 C -0.127 4.127 13 O -0.094 6.094 14 C -0.109 4.109 15 C 0.530 3.470 16 F -0.142 7.142 17 F -0.144 7.144 18 F -0.130 7.130 19 N -0.148 5.148 20 C -0.072 4.072 21 C -0.145 4.145 22 H 0.098 0.902 23 H 0.138 0.862 24 H 0.129 0.871 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.252 -5.207 2.958 6.398 hybrid contribution 0.432 0.126 -0.326 0.555 sum -1.821 -5.081 2.632 6.005 Atomic orbital electron populations 1.69806 1.07700 1.30015 1.33119 1.25980 0.94822 1.01747 0.92124 0.86212 0.80578 0.80081 0.79394 1.19290 1.19873 1.18237 1.19537 0.97973 0.90639 1.39893 0.89538 1.17459 0.91290 0.92421 0.89390 1.20967 1.01484 0.91732 1.02102 1.19136 0.93312 0.98782 0.98947 1.20119 0.98775 0.85731 1.08050 1.84203 1.35157 1.36461 1.53607 1.24885 0.95632 0.89256 1.01155 1.16090 0.78593 0.75770 0.76571 1.93274 1.53085 1.95817 1.72008 1.93250 1.89362 1.39789 1.92046 1.93273 1.92413 1.78067 1.49262 1.70358 1.16281 1.10515 1.17660 1.19692 0.93246 0.95513 0.98796 1.20517 0.98739 0.94290 1.00938 0.90232 0.86160 0.87099 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.23 10.96 55.54 0.61 -18.62 15 2 C 0.07 1.70 5.15 -17.34 -0.09 1.61 15 3 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 15 4 H -0.27 -5.00 7.11 56.52 0.40 -4.59 15 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 7 C -0.45 -10.84 9.04 -37.78 -0.34 -11.18 15 8 H 0.09 1.93 7.90 -52.48 -0.41 1.51 15 9 C 0.10 2.41 5.57 -106.84 -0.59 1.82 15 10 C -0.14 -3.10 9.71 -39.24 -0.38 -3.48 15 11 C -0.08 -1.73 9.98 -39.94 -0.40 -2.13 15 12 C -0.08 -1.81 7.45 -38.28 -0.29 -2.10 15 13 O -0.20 -4.42 10.72 3.73 0.04 -4.38 15 14 C 0.10 2.14 7.47 -13.11 -0.10 2.04 15 15 C 0.59 9.69 3.57 36.01 0.13 9.82 15 16 F -0.16 -2.53 17.30 2.25 0.04 -2.49 15 17 F -0.16 -2.47 17.27 2.25 0.04 -2.43 15 18 F -0.15 -2.40 17.22 2.25 0.04 -2.36 15 19 N -0.41 -9.75 11.23 -8.72 -0.10 -9.84 15 20 C 0.04 0.97 7.22 -84.72 -0.61 0.35 15 21 C -0.12 -3.18 8.73 -38.50 -0.34 -3.52 15 22 H 0.29 6.42 8.30 -40.82 -0.34 6.08 15 23 H 0.12 2.25 8.06 -52.49 -0.42 1.82 15 24 H 0.11 1.94 8.06 -52.48 -0.42 1.52 15 25 H 0.14 3.62 6.19 -52.49 -0.32 3.30 15 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -26.08 248.00 -4.35 -30.43 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -0.72 Total: 0.45 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.01 Total: -6.76 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: 0.51 Total: -28.46 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: 0.04 Total: -4.38 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.12 Total: -7.28 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.08 -4.35 -30.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113932426.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.834 kcal (2) G-P(sol) polarization free energy of solvation -26.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds