Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38376 * 119.87633 * 2 1 4 4 C 1.38413 * 120.20135 * 179.97438 * 3 2 1 5 5 C 1.37895 * 119.91699 * 0.02562 * 4 3 2 6 6 C 1.39002 * 120.25668 * 359.97438 * 5 4 3 7 7 C 1.37971 * 119.87355 * 180.02562 * 2 1 3 8 8 C 1.49469 * 109.72061 * 180.02562 * 6 5 4 9 9 N 1.33043 * 137.56410 * 180.02562 * 8 6 5 10 10 C 1.30930 * 116.59160 * 179.97438 * 9 8 6 11 11 C 1.39876 * 125.27553 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99732 * 179.97438 * 11 10 9 13 13 C 1.40177 * 119.99942 * 359.97438 * 11 10 9 14 14 N 1.30731 * 120.00095 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00066 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47285 * 59.99408 * 15 13 11 17 17 H 1.48502 * 109.47276 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47020 * 299.99831 * 15 13 11 19 19 S 1.75794 * 109.44724 * 359.80587 * 10 9 8 20 20 C 1.37545 * 108.93608 * 0.02562 * 8 6 5 21 21 C 1.50724 * 132.45498 * 180.02562 * 5 4 3 22 22 H 1.09002 * 109.47280 * 89.99792 * 1 2 3 23 23 H 1.09002 * 109.47501 * 209.99473 * 1 2 3 24 24 H 1.08995 * 109.47062 * 329.99833 * 1 2 3 25 25 H 1.07996 * 119.89580 * 359.97438 * 3 2 1 26 26 H 1.08004 * 120.04037 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.12347 * 0.03786 * 7 2 1 28 28 H 0.97000 * 120.00063 * 180.02562 * 14 13 11 29 29 H 1.09000 * 110.17750 * 60.89605 * 21 5 4 30 30 H 1.08993 * 110.18370 * 299.06458 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1999 0.0000 4 6 3.5804 1.2077 0.0005 5 6 4.2749 0.0164 0.0005 6 6 3.5904 -1.1934 0.0005 7 6 2.1942 -1.1964 -0.0005 8 6 4.5666 -2.3252 0.0012 9 7 4.5281 -3.6551 0.0010 10 6 5.6815 -4.2748 0.0013 11 6 5.8526 -5.6630 0.0018 12 1 6.8470 -6.0845 0.0015 13 6 4.7335 -6.5071 0.0025 14 7 3.5298 -5.9969 0.0033 15 14 4.9619 -8.3611 0.0024 16 1 5.7182 -8.7668 1.2143 17 1 3.6329 -9.0236 0.0038 18 1 5.7165 -8.7668 -1.2107 19 16 6.9816 -3.0916 -0.0038 20 6 5.8433 -1.8135 0.0021 21 6 5.7480 -0.3024 0.0015 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8899 0.5138 25 1 1.6526 2.1330 -0.0004 26 1 4.1158 2.1457 0.0010 27 1 1.6541 -2.1317 -0.0016 28 1 2.7554 -6.5810 0.0041 29 1 6.2201 0.1040 0.8960 30 1 6.2214 0.1042 -0.8921 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116929643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = 56.503214 kcal Electronic energy + Delta-G solvation = -15720.052423 eV Core-core repulsion = 13185.109170 eV Total energy + Delta-G solvation = -2534.943253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71587 -37.19737 -34.70138 -33.14235 -30.96104 -29.55108 -28.18347 -25.59410 -24.52161 -22.15184 -21.80642 -20.09226 -18.65661 -16.64811 -16.41125 -15.20002 -14.90742 -14.56494 -14.17639 -13.97671 -13.35478 -13.27212 -12.84697 -12.36582 -12.23321 -12.12318 -11.84603 -11.34925 -11.27803 -11.25129 -11.02335 -10.76580 -10.48267 -10.35639 -9.69665 -9.56264 -8.65004 -8.15682 -7.70648 -7.67053 -7.08265 -6.72562 -4.69016 1.53536 1.82253 2.56159 2.91472 2.98423 3.04498 3.08568 3.56371 3.81549 3.99020 4.57954 4.99162 5.18237 5.20049 5.25055 5.40707 5.63515 5.75250 5.79712 5.86412 5.99550 6.13945 6.23909 6.27704 6.39856 6.51870 6.78097 6.82124 6.96359 7.12210 7.31920 7.34313 7.48840 7.92494 8.18420 8.50232 9.82205 10.04519 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.006521 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.890438 B = 4292.696310 C = 5392.089758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.130 4.130 4 C -0.103 4.103 5 C -0.097 4.097 6 C 0.003 3.997 7 C -0.094 4.094 8 C 0.135 3.865 9 N -0.519 5.519 10 C 0.241 3.759 11 C -0.389 4.389 12 H 0.096 0.904 13 C 0.070 3.930 14 N -0.706 5.706 15 Si 0.922 3.078 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.261 1.261 19 S -0.039 6.039 20 C -0.403 4.403 21 C 0.031 3.969 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.283 0.717 29 H 0.074 0.926 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 6.737 -0.020 7.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.121 4.121 5 C -0.100 4.100 6 C 0.000 4.000 7 C -0.113 4.113 8 C -0.003 4.003 9 N -0.237 5.237 10 C -0.013 4.013 11 C -0.432 4.432 12 H 0.114 0.886 13 C -0.160 4.160 14 N -0.328 5.328 15 Si 0.745 3.255 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.185 1.185 19 S 0.221 5.779 20 C -0.527 4.527 21 C -0.008 4.008 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.144 6.327 -0.025 6.681 hybrid contribution -0.709 -0.224 -0.002 0.744 sum -2.853 6.103 -0.028 6.737 Atomic orbital electron populations 1.20721 0.91516 1.02322 1.01911 1.19698 0.95695 0.92863 1.01467 1.20827 0.93645 0.97050 1.03381 1.20225 0.93618 0.96184 1.02104 1.20314 0.96118 0.92890 1.00655 1.18996 0.91779 0.91358 0.97835 1.20909 0.92924 0.97657 0.99780 1.20379 0.90512 0.89854 0.99519 1.67010 1.23797 1.03207 1.29680 1.23907 0.85091 0.96402 0.95902 1.18933 0.95018 0.87522 1.41776 0.88559 1.26073 0.94414 1.01750 0.93746 1.70015 0.98852 1.37749 1.26148 0.86128 0.78870 0.80223 0.80257 1.18513 1.19877 1.18509 1.82698 1.15860 0.99766 1.79621 1.25012 0.97430 0.99275 1.30988 1.18527 0.91310 0.90267 1.00684 0.91593 0.91676 0.91982 0.86413 0.86367 0.85766 0.90615 0.90759 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.00 36.01 0.36 -0.99 16 2 C -0.10 -1.59 5.87 -104.67 -0.61 -2.20 16 3 C -0.13 -1.96 9.70 -39.47 -0.38 -2.34 16 4 C -0.10 -1.66 10.04 -39.64 -0.40 -2.05 16 5 C -0.10 -1.92 6.31 -104.45 -0.66 -2.57 16 6 C 0.00 0.06 6.20 -104.41 -0.65 -0.58 16 7 C -0.09 -1.89 9.75 -39.16 -0.38 -2.27 16 8 C 0.14 3.57 7.73 -82.91 -0.64 2.93 16 9 N -0.52 -14.90 8.73 -8.87 -0.08 -14.97 16 10 C 0.24 6.61 7.04 -17.32 -0.12 6.49 16 11 C -0.39 -10.02 9.38 -38.24 -0.36 -10.38 16 12 H 0.10 2.25 7.85 -52.49 -0.41 1.84 16 13 C 0.07 1.71 5.50 -17.29 -0.10 1.62 16 14 N -0.71 -18.37 11.86 55.56 0.66 -17.71 16 15 Si 0.92 17.56 29.56 -169.99 -5.03 12.53 16 16 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 17 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 19 S -0.04 -0.96 23.14 -107.50 -2.49 -3.44 16 20 C -0.40 -9.84 7.41 -34.21 -0.25 -10.10 16 21 C 0.03 0.62 6.74 -28.68 -0.19 0.42 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 24 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 25 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 28 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 277.20 15.07 4.18 4.18 Total: -1.00 -29.91 277.20 -10.06 -39.98 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -2.92 Total: 1.49 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -4.39 Total: -22.05 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.58 Total: -32.69 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.49 Total: -3.44 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.91 -10.06 -39.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116929643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.481 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds