Wall clock time and date at job start Mon Mar 30 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38376 * 119.87633 * 2 1 4 4 C 1.38413 * 120.20135 * 179.97438 * 3 2 1 5 5 C 1.37895 * 119.91699 * 0.02562 * 4 3 2 6 6 C 1.39002 * 120.25668 * 359.97438 * 5 4 3 7 7 C 1.37971 * 119.87355 * 180.02562 * 2 1 3 8 8 C 1.49469 * 109.72061 * 180.02562 * 6 5 4 9 9 N 1.33043 * 137.56410 * 180.02562 * 8 6 5 10 10 C 1.30930 * 116.59160 * 179.97438 * 9 8 6 11 11 C 1.39876 * 125.27553 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99732 * 179.97438 * 11 10 9 13 13 C 1.40177 * 119.99942 * 359.97438 * 11 10 9 14 14 N 1.30731 * 120.00095 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00066 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47285 * 59.99408 * 15 13 11 17 17 H 1.48502 * 109.47276 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47020 * 299.99831 * 15 13 11 19 19 S 1.75794 * 109.44724 * 359.80587 * 10 9 8 20 20 C 1.37545 * 108.93608 * 0.02562 * 8 6 5 21 21 C 1.50724 * 132.45498 * 180.02562 * 5 4 3 22 22 H 1.09002 * 109.47280 * 89.99792 * 1 2 3 23 23 H 1.09002 * 109.47501 * 209.99473 * 1 2 3 24 24 H 1.08995 * 109.47062 * 329.99833 * 1 2 3 25 25 H 1.07996 * 119.89580 * 359.97438 * 3 2 1 26 26 H 1.08004 * 120.04037 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.12347 * 0.03786 * 7 2 1 28 28 H 0.97000 * 120.00063 * 180.02562 * 14 13 11 29 29 H 1.09000 * 110.17750 * 60.89605 * 21 5 4 30 30 H 1.08993 * 110.18370 * 299.06458 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1999 0.0000 4 6 3.5804 1.2077 0.0005 5 6 4.2749 0.0164 0.0005 6 6 3.5904 -1.1934 0.0005 7 6 2.1942 -1.1964 -0.0005 8 6 4.5666 -2.3252 0.0012 9 7 4.5281 -3.6551 0.0010 10 6 5.6815 -4.2748 0.0013 11 6 5.8526 -5.6630 0.0018 12 1 6.8470 -6.0845 0.0015 13 6 4.7335 -6.5071 0.0025 14 7 3.5298 -5.9969 0.0033 15 14 4.9619 -8.3611 0.0024 16 1 5.7182 -8.7668 1.2143 17 1 3.6329 -9.0236 0.0038 18 1 5.7165 -8.7668 -1.2107 19 16 6.9816 -3.0916 -0.0038 20 6 5.8433 -1.8135 0.0021 21 6 5.7480 -0.3024 0.0015 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8899 0.5138 25 1 1.6526 2.1330 -0.0004 26 1 4.1158 2.1457 0.0010 27 1 1.6541 -2.1317 -0.0016 28 1 2.7554 -6.5810 0.0041 29 1 6.2201 0.1040 0.8960 30 1 6.2214 0.1042 -0.8921 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116929643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:38 Heat of formation + Delta-G solvation = 39.820082 kcal Electronic energy + Delta-G solvation = -15720.775858 eV Core-core repulsion = 13185.109170 eV Total energy + Delta-G solvation = -2535.666688 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26148 -38.91013 -36.36910 -34.87768 -32.37883 -30.97673 -30.01729 -27.08186 -26.10354 -23.91736 -23.40660 -21.54419 -20.40982 -18.43156 -18.22618 -16.89514 -16.32511 -15.98779 -15.78610 -15.51987 -15.01048 -14.41873 -14.37152 -14.00316 -13.92194 -13.60556 -13.17535 -12.88272 -12.84543 -12.71730 -12.56067 -12.29255 -12.06154 -11.80239 -11.51369 -11.30473 -10.23122 -9.77807 -9.63523 -9.40330 -8.86269 -8.57882 -6.65619 -0.02393 0.44310 0.80994 1.10193 1.40364 1.53012 1.54973 1.63919 2.17583 2.35800 2.90834 3.33203 3.50515 3.64001 4.00845 4.10882 4.22326 4.37222 4.63261 4.64000 4.73873 4.81549 4.85636 4.90867 4.98239 5.01194 5.26232 5.38184 5.43980 5.51918 5.69703 5.77669 6.02873 6.11897 6.27405 6.56259 7.89357 8.23468 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.006521 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.890438 B = 4292.696310 C = 5392.089758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.092 4.092 5 C -0.105 4.105 6 C -0.046 4.046 7 C -0.120 4.120 8 C 0.094 3.906 9 N -0.562 5.562 10 C 0.202 3.798 11 C -0.415 4.415 12 H 0.112 0.888 13 C 0.024 3.976 14 N -0.752 5.752 15 Si 1.008 2.992 16 H -0.251 1.251 17 H -0.266 1.266 18 H -0.250 1.250 19 S -0.023 6.023 20 C -0.416 4.416 21 C 0.034 3.966 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.168 0.832 26 H 0.162 0.838 27 H 0.098 0.902 28 H 0.290 0.710 29 H 0.094 0.906 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 8.788 -0.025 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.049 4.049 7 C -0.139 4.139 8 C -0.042 4.042 9 N -0.282 5.282 10 C -0.052 4.052 11 C -0.458 4.458 12 H 0.130 0.870 13 C -0.201 4.201 14 N -0.375 5.375 15 Si 0.825 3.175 16 H -0.174 1.174 17 H -0.191 1.191 18 H -0.174 1.174 19 S 0.237 5.763 20 C -0.540 4.540 21 C -0.004 4.004 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.112 0.888 25 H 0.185 0.815 26 H 0.179 0.821 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.697 8.422 -0.031 8.843 hybrid contribution -0.606 -0.711 -0.001 0.934 sum -3.303 7.711 -0.032 8.388 Atomic orbital electron populations 1.20806 0.88677 1.03645 1.03185 1.20130 0.97753 0.91888 0.99421 1.21418 0.93493 0.98161 1.00093 1.20733 0.94270 0.96254 0.99714 1.20505 0.95543 0.93153 1.01530 1.19225 0.92752 0.91308 1.01589 1.20928 0.92340 0.98568 1.02039 1.21165 0.92993 0.89959 1.00073 1.66984 1.25132 1.04882 1.31161 1.24446 0.86092 0.97779 0.96851 1.19482 0.96477 0.87602 1.42254 0.87001 1.27256 0.93403 1.07281 0.92206 1.70139 1.00114 1.40175 1.27055 0.84881 0.79192 0.72606 0.80797 1.17425 1.19058 1.17416 1.82319 1.14920 0.99298 1.79787 1.25722 0.96694 1.01843 1.29773 1.18636 0.92317 0.87087 1.02388 0.90207 0.92307 0.88761 0.81478 0.82064 0.88390 0.89960 0.88796 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 10.00 71.24 0.71 -1.66 16 2 C -0.09 -2.82 5.87 -19.89 -0.12 -2.93 16 3 C -0.11 -2.88 9.70 22.34 0.22 -2.67 16 4 C -0.09 -2.58 10.04 22.23 0.22 -2.35 16 5 C -0.10 -4.01 6.31 -19.75 -0.12 -4.13 16 6 C -0.05 -2.18 6.20 -19.73 -0.12 -2.30 16 7 C -0.12 -5.00 9.75 22.54 0.22 -4.78 16 8 C 0.09 5.26 7.73 41.83 0.32 5.58 16 9 N -0.56 -34.50 8.73 -181.96 -1.59 -36.09 16 10 C 0.20 11.72 7.04 85.22 0.60 12.32 16 11 C -0.41 -22.30 9.38 23.14 0.22 -22.08 16 12 H 0.11 5.38 7.85 -2.91 -0.02 5.36 16 13 C 0.02 1.22 5.50 85.33 0.47 1.68 16 14 N -0.75 -41.27 11.86 21.87 0.26 -41.01 16 15 Si 1.01 36.40 29.56 68.60 2.03 38.42 16 16 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 17 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 18 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 19 S -0.02 -1.16 23.14 -56.49 -1.31 -2.46 16 20 C -0.42 -21.00 7.41 25.75 0.19 -20.81 16 21 C 0.03 1.35 6.74 29.33 0.20 1.54 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.06 1.38 8.08 -2.39 -0.02 1.36 16 24 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 25 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 26 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 27 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.29 14.19 8.29 -92.71 -0.77 13.42 16 29 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -71.56 277.20 3.56 -68.00 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.16 Total: 15.71 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 3.01 Total: -42.58 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.33 Total: -77.10 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.42 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -1.31 Total: -2.46 kcal Total: -71.56 3.56 -68.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116929643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.820 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds