Wall clock time and date at job start Mon Mar 30 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47412 * 2 1 4 4 N 1.46494 * 109.47046 * 120.00407 * 2 1 3 5 5 C 1.36868 * 120.00332 * 118.58715 * 4 2 1 6 6 H 1.07991 * 120.00292 * 148.25552 * 5 4 2 7 7 C 1.39011 * 119.99557 * 328.53755 * 5 4 2 8 8 N 1.31397 * 120.00490 * 38.28409 * 7 5 4 9 9 Si 1.86803 * 119.99636 * 218.29054 * 7 5 4 10 10 H 1.48502 * 109.47199 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47495 * 119.99747 * 9 7 5 12 12 H 1.48503 * 109.47023 * 239.99905 * 9 7 5 13 13 C 1.34779 * 120.00336 * 298.58216 * 4 2 1 14 14 O 1.21758 * 120.00447 * 181.90992 * 13 4 2 15 15 C 1.46389 * 119.99276 * 1.91113 * 13 4 2 16 16 C 1.36736 * 125.97794 * 181.83507 * 15 13 4 17 17 C 1.40216 * 106.73083 * 179.97438 * 16 15 13 18 18 C 1.35408 * 107.12777 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 125.62678 * 180.02562 * 18 17 16 20 20 O 1.33984 * 108.74816 * 359.75254 * 18 17 16 21 21 H 1.09004 * 109.46755 * 260.70841 * 1 2 3 22 22 H 1.09000 * 109.47281 * 20.70652 * 1 2 3 23 23 H 1.08998 * 109.47756 * 140.70948 * 1 2 3 24 24 H 1.08999 * 109.46613 * 240.00014 * 2 1 3 25 25 H 1.09000 * 109.47223 * 220.67263 * 3 2 1 26 26 H 1.09009 * 109.46982 * 340.66902 * 3 2 1 27 27 H 1.08995 * 109.47420 * 100.66833 * 3 2 1 28 28 H 0.97000 * 120.00120 * 179.97438 * 8 7 5 29 29 H 1.07998 * 126.64174 * 359.97034 * 16 15 13 30 30 H 1.08001 * 126.43697 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.7811 -1.8201 1.0707 6 1 3.5396 -2.0438 1.8061 7 6 2.5835 -2.6762 -0.0065 8 7 2.3166 -2.1851 -1.1957 9 14 2.6972 -4.5248 0.2366 10 1 3.0070 -4.8190 1.6588 11 1 1.4019 -5.1528 -0.1284 12 1 3.7737 -5.0724 -0.6275 13 6 1.7165 -0.2139 2.4201 14 8 2.1511 -0.7678 3.4134 15 6 0.8660 0.9699 2.5550 16 6 0.5129 1.5758 3.7289 17 6 -0.3031 2.6649 3.3915 18 6 -0.4122 2.6785 2.0419 19 17 -1.3175 3.8317 1.1121 20 8 0.2987 1.6587 1.5421 21 1 -0.3633 -0.1659 1.0142 22 1 -0.3634 0.9613 -0.3634 23 1 -0.3634 -0.7953 -0.6507 24 1 1.8932 -0.5138 -0.8900 25 1 2.8960 1.5251 -0.6698 26 1 1.2469 2.1083 -0.3402 27 1 2.3405 1.7216 1.0098 28 1 2.1791 -2.7825 -1.9474 29 1 0.8058 1.2738 4.7236 30 1 -0.7584 3.3626 4.0789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126726245.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:53 Heat of formation + Delta-G solvation = 13.471275 kcal Electronic energy + Delta-G solvation = -17936.084380 eV Core-core repulsion = 14954.089402 eV Total energy + Delta-G solvation = -2981.994978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.40171 -38.55038 -36.79160 -35.67220 -33.06510 -32.35003 -30.47561 -29.10250 -26.43796 -25.25715 -22.62022 -21.52197 -21.04342 -19.12367 -17.57185 -16.94404 -16.23723 -15.70162 -15.02031 -14.22968 -13.86107 -13.67540 -13.40990 -13.04975 -12.67018 -12.29203 -12.16078 -12.03745 -11.66674 -11.47111 -11.30592 -11.25042 -11.10959 -10.59186 -10.39478 -10.27410 -9.69913 -9.54114 -8.87382 -8.80175 -8.08449 -7.85695 -6.61249 -3.99789 1.44197 1.54482 2.63978 3.07409 3.20728 3.31436 3.76970 4.03086 4.11041 4.66569 4.83499 5.17240 5.42826 5.86104 5.87449 6.05497 6.10861 6.12027 6.33163 6.39165 6.63787 6.65251 6.68013 6.81876 7.09233 7.16525 7.19757 7.68175 8.08787 8.46273 8.93508 9.20100 9.79849 10.26775 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.034067 B = 0.007348 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.722579 B = 3809.532486 C = 4324.390382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 C -0.150 4.150 4 N -0.407 5.407 5 C -0.324 4.324 6 H 0.106 0.894 7 C 0.060 3.940 8 N -0.831 5.831 9 Si 0.908 3.092 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.503 3.497 14 O -0.570 6.570 15 C -0.003 4.003 16 C -0.166 4.166 17 C -0.180 4.180 18 C 0.003 3.997 19 Cl 0.007 6.993 20 O -0.129 6.129 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.179 0.821 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.277 0.723 29 H 0.159 0.841 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 8.220 0.469 10.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.207 4.207 4 N -0.123 5.123 5 C -0.450 4.450 6 H 0.124 0.876 7 C -0.147 4.147 8 N -0.466 5.466 9 Si 0.733 3.267 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.206 1.206 13 C 0.292 3.708 14 O -0.456 6.456 15 C -0.056 4.056 16 C -0.187 4.187 17 C -0.201 4.201 18 C -0.075 4.075 19 Cl 0.035 6.965 20 O -0.025 6.025 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.194 0.806 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.177 0.823 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.647 7.890 0.282 9.706 hybrid contribution -0.338 -0.331 -0.033 0.475 sum -5.985 7.558 0.249 9.644 Atomic orbital electron populations 1.22335 0.96899 1.00008 1.00705 1.22823 0.93221 0.92551 0.94582 1.22495 1.00181 0.97276 1.00780 1.43844 1.42115 1.23092 1.03230 1.19486 1.17570 0.96802 1.11149 0.87624 1.25444 0.94617 1.01035 0.93626 1.69258 1.42279 1.35742 0.99337 0.86206 0.78147 0.82628 0.79768 1.18486 1.20115 1.20628 1.16293 0.85462 0.84164 0.84866 1.90713 1.57787 1.60010 1.37130 1.22947 1.00832 0.96579 0.85290 1.21693 1.01497 0.96258 0.99240 1.21330 1.04525 1.01842 0.92383 1.22797 1.01909 0.92740 0.90072 1.98387 1.70254 1.52777 1.75057 1.85085 1.50092 1.32733 1.34621 0.93492 0.92975 0.93374 0.80567 0.93382 0.92831 0.93604 0.91131 0.82344 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.11 37.16 0.30 -2.63 16 2 C 0.07 1.62 2.81 -67.94 -0.19 1.43 16 3 C -0.15 -3.02 8.17 37.15 0.30 -2.71 16 4 N -0.41 -10.41 2.55 -109.31 -0.28 -10.68 16 5 C -0.32 -8.72 8.97 -15.02 -0.13 -8.85 16 6 H 0.11 2.97 7.76 -52.49 -0.41 2.57 16 7 C 0.06 1.51 5.31 -17.45 -0.09 1.42 16 8 N -0.83 -20.28 10.30 55.50 0.57 -19.71 16 9 Si 0.91 19.61 29.68 -169.99 -5.05 14.57 16 10 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.50 12.73 6.61 -12.98 -0.09 12.65 16 14 O -0.57 -15.92 16.65 5.14 0.09 -15.84 16 15 C 0.00 -0.07 4.70 -36.85 -0.17 -0.24 16 16 C -0.17 -3.02 10.62 -39.38 -0.42 -3.44 16 17 C -0.18 -2.78 10.84 -39.85 -0.43 -3.21 16 18 C 0.00 0.05 7.93 29.72 0.24 0.28 16 19 Cl 0.01 0.09 29.30 -51.86 -1.52 -1.43 16 20 O -0.13 -2.45 2.50 4.63 0.01 -2.44 16 21 H 0.05 1.02 5.50 -51.93 -0.29 0.73 16 22 H 0.05 0.96 6.42 -51.93 -0.33 0.63 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.18 4.32 4.37 -58.54 -0.26 4.06 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.97 6.39 -51.92 -0.33 0.64 16 27 H 0.05 0.97 5.56 -51.93 -0.29 0.68 16 28 H 0.28 6.25 8.31 -40.82 -0.34 5.91 16 29 H 0.16 2.71 8.06 -52.49 -0.42 2.29 16 30 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 263.06 15.07 3.96 3.96 Total: -1.00 -27.65 263.06 -5.63 -33.28 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.73 Total: 3.60 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.69 Total: -5.30 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.29 Total: -30.40 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.10 Total: -18.28 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.05 Total: 14.57 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.52 Total: -1.43 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.65 -5.63 -33.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126726245.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.749 kcal (2) G-P(sol) polarization free energy of solvation -27.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds