Wall clock time and date at job start Mon Mar 30 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47412 * 2 1 4 4 N 1.46494 * 109.47046 * 120.00407 * 2 1 3 5 5 C 1.36868 * 120.00332 * 118.58715 * 4 2 1 6 6 H 1.07991 * 120.00292 * 148.25552 * 5 4 2 7 7 C 1.39011 * 119.99557 * 328.53755 * 5 4 2 8 8 N 1.31397 * 120.00490 * 38.28409 * 7 5 4 9 9 Si 1.86803 * 119.99636 * 218.29054 * 7 5 4 10 10 H 1.48502 * 109.47199 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47495 * 119.99747 * 9 7 5 12 12 H 1.48503 * 109.47023 * 239.99905 * 9 7 5 13 13 C 1.34779 * 120.00336 * 298.58216 * 4 2 1 14 14 O 1.21758 * 120.00447 * 181.90992 * 13 4 2 15 15 C 1.46389 * 119.99276 * 1.91113 * 13 4 2 16 16 C 1.36736 * 125.97794 * 181.83507 * 15 13 4 17 17 C 1.40216 * 106.73083 * 179.97438 * 16 15 13 18 18 C 1.35408 * 107.12777 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 125.62678 * 180.02562 * 18 17 16 20 20 O 1.33984 * 108.74816 * 359.75254 * 18 17 16 21 21 H 1.09004 * 109.46755 * 260.70841 * 1 2 3 22 22 H 1.09000 * 109.47281 * 20.70652 * 1 2 3 23 23 H 1.08998 * 109.47756 * 140.70948 * 1 2 3 24 24 H 1.08999 * 109.46613 * 240.00014 * 2 1 3 25 25 H 1.09000 * 109.47223 * 220.67263 * 3 2 1 26 26 H 1.09009 * 109.46982 * 340.66902 * 3 2 1 27 27 H 1.08995 * 109.47420 * 100.66833 * 3 2 1 28 28 H 0.97000 * 120.00120 * 179.97438 * 8 7 5 29 29 H 1.07998 * 126.64174 * 359.97034 * 16 15 13 30 30 H 1.08001 * 126.43697 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.7811 -1.8201 1.0707 6 1 3.5396 -2.0438 1.8061 7 6 2.5835 -2.6762 -0.0065 8 7 2.3166 -2.1851 -1.1957 9 14 2.6972 -4.5248 0.2366 10 1 3.0070 -4.8190 1.6588 11 1 1.4019 -5.1528 -0.1284 12 1 3.7737 -5.0724 -0.6275 13 6 1.7165 -0.2139 2.4201 14 8 2.1511 -0.7678 3.4134 15 6 0.8660 0.9699 2.5550 16 6 0.5129 1.5758 3.7289 17 6 -0.3031 2.6649 3.3915 18 6 -0.4122 2.6785 2.0419 19 17 -1.3175 3.8317 1.1121 20 8 0.2987 1.6587 1.5421 21 1 -0.3633 -0.1659 1.0142 22 1 -0.3634 0.9613 -0.3634 23 1 -0.3634 -0.7953 -0.6507 24 1 1.8932 -0.5138 -0.8900 25 1 2.8960 1.5251 -0.6698 26 1 1.2469 2.1083 -0.3402 27 1 2.3405 1.7216 1.0098 28 1 2.1791 -2.7825 -1.9474 29 1 0.8058 1.2738 4.7236 30 1 -0.7584 3.3626 4.0789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126726245.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:53 Heat of formation + Delta-G solvation = -2.323874 kcal Electronic energy + Delta-G solvation = -17936.769309 eV Core-core repulsion = 14954.089402 eV Total energy + Delta-G solvation = -2982.679907 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.84796 -40.38603 -37.97744 -37.54841 -34.80069 -33.92420 -32.30527 -30.61836 -28.08634 -27.11224 -24.32396 -22.90986 -22.67924 -20.79652 -19.22388 -18.65206 -17.71228 -17.45161 -16.84096 -16.04018 -15.71901 -15.23932 -15.13243 -14.35978 -14.19837 -13.86423 -13.72354 -13.66308 -13.30374 -13.22099 -13.03425 -12.71997 -12.35918 -12.31493 -12.15367 -11.97493 -11.45306 -10.93671 -10.78114 -10.75901 -9.81598 -9.45476 -8.49816 -5.99568 0.04668 0.15962 1.24385 1.35933 1.43441 1.57329 2.13510 2.29722 2.38465 2.84624 2.99340 3.85850 3.91543 4.21494 4.42094 4.47274 4.60101 4.65486 4.70292 4.82834 5.01633 5.03202 5.17296 5.29599 5.31144 5.44336 5.69339 5.75429 6.17807 6.56614 6.99644 7.30743 7.89460 8.37462 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.034067 B = 0.007348 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.722579 B = 3809.532486 C = 4324.390382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.066 3.934 3 C -0.138 4.138 4 N -0.418 5.418 5 C -0.372 4.372 6 H 0.075 0.925 7 C 0.039 3.961 8 N -0.836 5.836 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.263 1.263 13 C 0.494 3.506 14 O -0.616 6.616 15 C -0.043 4.043 16 C -0.148 4.148 17 C -0.169 4.169 18 C 0.008 3.992 19 Cl 0.042 6.958 20 O -0.136 6.136 21 H 0.034 0.966 22 H 0.076 0.924 23 H 0.042 0.958 24 H 0.163 0.837 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.033 0.967 28 H 0.287 0.713 29 H 0.165 0.835 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 9.659 -0.139 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.036 4.036 3 C -0.195 4.195 4 N -0.134 5.134 5 C -0.499 4.499 6 H 0.093 0.907 7 C -0.169 4.169 8 N -0.471 5.471 9 Si 0.791 3.209 10 H -0.203 1.203 11 H -0.191 1.191 12 H -0.188 1.188 13 C 0.285 3.715 14 O -0.506 6.506 15 C -0.095 4.095 16 C -0.170 4.170 17 C -0.188 4.188 18 C -0.070 4.070 19 Cl 0.070 6.930 20 O -0.034 6.034 21 H 0.053 0.947 22 H 0.094 0.906 23 H 0.061 0.939 24 H 0.179 0.821 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.183 0.817 30 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -7.368 9.347 -0.379 11.908 hybrid contribution 0.109 -0.611 0.131 0.635 sum -7.259 8.735 -0.248 11.361 Atomic orbital electron populations 1.22206 0.95383 1.01092 0.99890 1.22845 0.94457 0.93421 0.92927 1.22370 1.00903 0.96109 1.00161 1.43991 1.42035 1.23125 1.04203 1.19334 1.19320 0.99419 1.11802 0.90677 1.26031 0.93890 1.04009 0.93011 1.69296 1.41239 1.37026 0.99500 0.85329 0.78875 0.77980 0.78747 1.20332 1.19064 1.18777 1.16783 0.85387 0.85132 0.84240 1.90646 1.59658 1.61992 1.38302 1.22141 1.03348 0.97277 0.86768 1.22007 1.00174 0.96103 0.98679 1.21699 1.03355 1.01169 0.92625 1.23313 1.00566 0.91939 0.91181 1.98412 1.69115 1.51047 1.74401 1.84983 1.50578 1.33481 1.34308 0.94715 0.90553 0.93924 0.82117 0.93240 0.90494 0.94805 0.90080 0.81726 0.78762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 8.11 71.98 0.58 -4.61 16 2 C 0.07 3.02 2.81 44.99 0.13 3.15 16 3 C -0.14 -5.48 8.17 71.98 0.59 -4.89 16 4 N -0.42 -22.20 2.55 -617.93 -1.58 -23.77 16 5 C -0.37 -21.06 8.97 84.09 0.75 -20.30 16 6 H 0.08 4.57 7.76 -2.92 -0.02 4.54 16 7 C 0.04 1.96 5.31 84.94 0.45 2.41 16 8 N -0.84 -40.90 10.30 21.68 0.22 -40.68 16 9 Si 0.97 40.80 29.68 68.60 2.04 42.84 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 13 C 0.49 25.97 6.61 86.36 0.57 26.54 16 14 O -0.62 -36.31 16.65 -4.53 -0.08 -36.38 16 15 C -0.04 -1.80 4.70 24.04 0.11 -1.69 16 16 C -0.15 -5.19 10.62 22.40 0.24 -4.95 16 17 C -0.17 -4.58 10.84 22.10 0.24 -4.34 16 18 C 0.01 0.24 7.93 67.17 0.53 0.77 16 19 Cl 0.04 0.93 29.30 -2.72 -0.08 0.85 16 20 O -0.14 -4.96 2.50 -6.33 -0.02 -4.97 16 21 H 0.03 1.49 5.50 -2.38 -0.01 1.47 16 22 H 0.08 2.65 6.42 -2.39 -0.02 2.63 16 23 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.16 7.95 4.37 -15.45 -0.07 7.88 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 2.62 6.39 -2.38 -0.02 2.61 16 27 H 0.03 1.42 5.56 -2.39 -0.01 1.40 16 28 H 0.29 12.72 8.31 -92.71 -0.77 11.95 16 29 H 0.17 5.47 8.06 -2.91 -0.02 5.44 16 30 H 0.20 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -62.09 263.06 5.82 -56.26 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.12 Total: 13.76 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 4.20 Total: -7.90 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -1.36 Total: -64.46 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.09 Total: -41.35 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.04 Total: 42.84 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -0.08 Total: 0.85 kcal Total: -62.09 5.82 -56.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126726245.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.940 kcal (2) G-P(sol) polarization free energy of solvation -62.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds