Wall clock time and date at job start Mon Mar 30 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00498 * 2 1 4 4 C 1.39312 * 119.89678 * 359.73298 * 3 2 1 5 5 C 1.38794 * 120.52291 * 179.71939 * 4 3 2 6 6 Cl 1.73602 * 119.83990 * 180.29978 * 5 4 3 7 7 C 1.37613 * 120.32295 * 0.55203 * 5 4 3 8 8 C 1.41274 * 119.79579 * 359.72507 * 7 5 4 9 9 C 1.40349 * 120.25993 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00676 * 155.53738 * 9 8 7 11 11 C 1.46529 * 119.99628 * 335.53258 * 9 8 7 12 12 N 1.29508 * 119.99776 * 344.54522 * 11 9 8 13 13 Si 1.86798 * 119.99940 * 164.54998 * 11 9 8 14 14 H 1.48498 * 109.47160 * 89.99897 * 13 11 9 15 15 H 1.48497 * 109.46985 * 209.99996 * 13 11 9 16 16 H 1.48497 * 109.46989 * 329.99962 * 13 11 9 17 17 C 1.37917 * 119.90249 * 180.02562 * 3 2 1 18 18 N 1.48014 * 120.16559 * 0.02562 * 17 3 2 19 19 O 1.31702 * 119.99972 * 90.00397 * 18 17 3 20 20 O 1.31702 * 120.00362 * 269.99803 * 18 17 3 21 21 H 1.08998 * 109.47261 * 59.99511 * 1 2 3 22 22 H 1.09007 * 109.46917 * 300.00053 * 1 2 3 23 23 H 1.08995 * 109.47408 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.73640 * 359.97438 * 4 3 2 25 25 H 1.08003 * 120.10192 * 179.74573 * 7 5 4 26 26 H 0.97009 * 119.99632 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2853 2.3779 -0.0056 5 6 1.9020 3.6213 0.0002 6 17 0.9367 5.0642 0.0009 7 6 3.2748 3.7160 0.0001 8 6 4.0595 2.5413 0.0000 9 6 5.4604 2.6265 0.0005 10 1 6.0511 1.8095 0.3877 11 6 6.1217 3.8241 -0.5245 12 7 5.4571 4.6640 -1.2527 13 14 7.9231 4.1391 -0.1438 14 1 8.7675 3.5153 -1.1940 15 1 8.1736 5.6025 -0.1116 16 1 8.2601 3.5501 1.1771 17 6 3.4235 1.2806 -0.0005 18 7 4.2310 0.0401 -0.0017 19 8 4.5898 -0.5110 -1.1428 20 8 4.5908 -0.5125 1.1383 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.2072 2.3146 -0.0104 25 1 3.7509 4.6855 0.0005 26 1 5.8948 5.4571 -1.5999 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141315170.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:59 Heat of formation + Delta-G solvation = -14.832478 kcal Electronic energy + Delta-G solvation = -16818.740665 eV Core-core repulsion = 13699.685250 eV Total energy + Delta-G solvation = -3119.055416 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59483 -37.66998 -36.87179 -35.70319 -34.02559 -33.22973 -30.78971 -29.79974 -27.07558 -26.29169 -24.64539 -21.56404 -21.00073 -18.65969 -17.29744 -17.11337 -16.59316 -16.12748 -15.47501 -15.35080 -14.59548 -14.11945 -13.55612 -13.17828 -12.75284 -12.60115 -11.94805 -11.63929 -11.50042 -11.42617 -11.08297 -11.00220 -10.72345 -10.40946 -10.30049 -10.19476 -9.91205 -9.66926 -9.63547 -8.29637 -7.73615 -7.57819 -5.20395 0.96834 1.89770 2.24782 2.45530 2.72776 2.74666 2.82497 2.84654 3.44171 3.66005 3.80696 4.69633 5.31674 5.40781 5.58455 5.77057 5.95535 6.06599 6.17154 6.33387 6.59048 6.80982 6.89771 7.12769 7.27253 7.57998 7.79807 7.83471 7.88243 8.03351 9.28131 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.010358 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.775651 B = 2702.605517 C = 4219.504295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.325 6.325 3 C 0.222 3.778 4 C -0.332 4.332 5 C 0.048 3.952 6 Cl -0.100 7.100 7 C -0.171 4.171 8 C 0.161 3.839 9 C -0.418 4.418 10 H 0.096 0.904 11 C 0.074 3.926 12 N -0.725 5.725 13 Si 0.931 3.069 14 H -0.257 1.257 15 H -0.265 1.265 16 H -0.248 1.248 17 C -0.168 4.168 18 N 0.021 4.979 19 O -0.172 6.172 20 O -0.188 6.188 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.094 0.906 24 H 0.125 0.875 25 H 0.146 0.854 26 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.135 2.280 0.957 4.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C 0.175 3.825 4 C -0.353 4.353 5 C 0.021 3.979 6 Cl -0.071 7.071 7 C -0.192 4.192 8 C 0.156 3.844 9 C -0.442 4.442 10 H 0.114 0.886 11 C -0.157 4.157 12 N -0.343 5.343 13 Si 0.752 3.248 14 H -0.181 1.181 15 H -0.189 1.189 16 H -0.171 1.171 17 C -0.252 4.252 18 N 0.515 4.485 19 O -0.379 6.379 20 O -0.390 6.390 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.113 0.887 24 H 0.143 0.857 25 H 0.164 0.836 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.568 3.074 0.822 5.567 hybrid contribution 0.459 0.085 0.011 0.466 sum -4.109 3.159 0.834 5.250 Atomic orbital electron populations 1.22971 0.78365 1.03219 1.01553 1.86070 1.21764 1.27225 1.88729 1.17762 0.88050 0.84214 0.92434 1.19999 0.98399 0.89267 1.27633 1.20388 0.91205 0.85441 1.00872 1.98289 1.72474 1.39324 1.97029 1.21153 0.89636 0.98946 1.09428 1.16631 0.93408 0.86295 0.88075 1.21071 0.90710 1.01267 1.31117 0.88564 1.27634 1.02935 0.93665 0.91504 1.69068 1.40454 1.08287 1.16468 0.85885 0.78404 0.79004 0.81508 1.18089 1.18949 1.17122 1.19270 0.85837 0.81756 1.38308 1.50036 0.96295 1.01237 1.00891 1.96153 1.59350 1.66300 1.16061 1.96149 1.60080 1.66519 1.16235 0.92555 0.92584 0.88745 0.85716 0.83627 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 15 2 O -0.32 -6.84 10.24 -19.44 -0.20 -7.04 15 3 C 0.22 5.12 6.67 -39.30 -0.26 4.86 15 4 C -0.33 -6.93 8.84 -38.98 -0.34 -7.27 15 5 C 0.05 1.02 6.31 -39.60 -0.25 0.77 15 6 Cl -0.10 -1.80 28.94 -51.86 -1.50 -3.30 15 7 C -0.17 -4.01 8.54 -38.66 -0.33 -4.34 15 8 C 0.16 4.07 5.61 -106.82 -0.60 3.47 15 9 C -0.42 -10.35 8.98 -35.45 -0.32 -10.67 15 10 H 0.10 2.44 7.63 -52.49 -0.40 2.04 15 11 C 0.07 1.61 5.35 -15.19 -0.08 1.53 15 12 N -0.72 -15.77 10.96 55.98 0.61 -15.16 15 13 Si 0.93 16.24 29.67 -169.99 -5.04 11.20 15 14 H -0.26 -4.47 7.11 56.52 0.40 -4.07 15 15 H -0.27 -4.32 7.11 56.52 0.40 -3.92 15 16 H -0.25 -4.40 7.11 56.52 0.40 -4.00 15 17 C -0.17 -4.30 6.32 -78.94 -0.50 -4.80 15 18 N 0.02 0.56 3.80 34.45 0.13 0.69 15 19 O -0.17 -4.54 19.97 -31.57 -0.63 -5.17 15 20 O -0.19 -4.89 19.97 -31.57 -0.63 -5.52 15 21 H 0.06 0.76 7.64 -51.93 -0.40 0.37 15 22 H 0.06 0.75 7.67 -51.93 -0.40 0.35 15 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.13 2.24 6.27 -52.48 -0.33 1.91 15 25 H 0.15 3.38 6.10 -52.48 -0.32 3.06 15 26 H 0.30 5.73 8.27 -40.82 -0.34 5.39 15 LS Contribution 262.99 15.07 3.96 3.96 Total: -1.00 -27.11 262.99 -6.39 -33.49 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -1.40 Total: 1.80 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.69 Total: -14.96 kcal Atomic # 7 Polarization: -15.22 SS G_CDS: 0.74 Total: -14.47 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.46 Total: -17.73 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.04 Total: 11.20 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.50 Total: -3.30 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.11 -6.39 -33.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141315170.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.662 kcal (2) G-P(sol) polarization free energy of solvation -27.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds