Wall clock time and date at job start Mon Mar 30 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00498 * 2 1 4 4 C 1.39312 * 119.89678 * 359.73298 * 3 2 1 5 5 C 1.38794 * 120.52291 * 179.71939 * 4 3 2 6 6 Cl 1.73602 * 119.83990 * 180.29978 * 5 4 3 7 7 C 1.37613 * 120.32295 * 0.55203 * 5 4 3 8 8 C 1.41274 * 119.79579 * 359.72507 * 7 5 4 9 9 C 1.40349 * 120.25993 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00676 * 155.53738 * 9 8 7 11 11 C 1.46529 * 119.99628 * 335.53258 * 9 8 7 12 12 N 1.29508 * 119.99776 * 344.54522 * 11 9 8 13 13 Si 1.86798 * 119.99940 * 164.54998 * 11 9 8 14 14 H 1.48498 * 109.47160 * 89.99897 * 13 11 9 15 15 H 1.48497 * 109.46985 * 209.99996 * 13 11 9 16 16 H 1.48497 * 109.46989 * 329.99962 * 13 11 9 17 17 C 1.37917 * 119.90249 * 180.02562 * 3 2 1 18 18 N 1.48014 * 120.16559 * 0.02562 * 17 3 2 19 19 O 1.31702 * 119.99972 * 90.00397 * 18 17 3 20 20 O 1.31702 * 120.00362 * 269.99803 * 18 17 3 21 21 H 1.08998 * 109.47261 * 59.99511 * 1 2 3 22 22 H 1.09007 * 109.46917 * 300.00053 * 1 2 3 23 23 H 1.08995 * 109.47408 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.73640 * 359.97438 * 4 3 2 25 25 H 1.08003 * 120.10192 * 179.74573 * 7 5 4 26 26 H 0.97009 * 119.99632 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2853 2.3779 -0.0056 5 6 1.9020 3.6213 0.0002 6 17 0.9367 5.0642 0.0009 7 6 3.2748 3.7160 0.0001 8 6 4.0595 2.5413 0.0000 9 6 5.4604 2.6265 0.0005 10 1 6.0511 1.8095 0.3877 11 6 6.1217 3.8241 -0.5245 12 7 5.4571 4.6640 -1.2527 13 14 7.9231 4.1391 -0.1438 14 1 8.7675 3.5153 -1.1940 15 1 8.1736 5.6025 -0.1116 16 1 8.2601 3.5501 1.1771 17 6 3.4235 1.2806 -0.0005 18 7 4.2310 0.0401 -0.0017 19 8 4.5898 -0.5110 -1.1428 20 8 4.5908 -0.5125 1.1383 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.2072 2.3146 -0.0104 25 1 3.7509 4.6855 0.0005 26 1 5.8948 5.4571 -1.5999 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141315170.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:59 Heat of formation + Delta-G solvation = -29.824750 kcal Electronic energy + Delta-G solvation = -16819.390779 eV Core-core repulsion = 13699.685250 eV Total energy + Delta-G solvation = -3119.705529 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.28356 -39.54844 -38.60182 -37.33161 -35.69643 -35.29906 -32.56231 -31.49992 -28.44343 -28.09964 -26.47520 -23.25505 -22.81496 -20.35119 -19.20117 -19.13807 -18.27835 -17.84040 -17.06157 -16.79783 -16.29093 -15.87241 -15.07173 -14.90643 -14.29968 -14.16554 -13.55513 -13.17612 -13.02587 -12.89527 -12.76645 -12.49845 -12.44018 -12.13906 -11.90441 -11.86957 -11.75823 -11.73245 -11.25339 -10.02297 -9.46287 -9.21778 -7.01910 -1.07581 0.12539 0.51857 0.54687 1.17110 1.28059 1.35271 1.45240 2.02372 2.16227 2.19147 2.91012 4.01253 4.12268 4.30694 4.31903 4.38779 4.42750 4.59328 4.62829 4.78241 5.00667 5.21615 5.33039 5.49484 5.78225 5.85287 6.02936 6.16820 6.29716 7.69816 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.010358 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.775651 B = 2702.605517 C = 4219.504295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.347 6.347 3 C 0.218 3.782 4 C -0.320 4.320 5 C 0.049 3.951 6 Cl -0.065 7.065 7 C -0.187 4.187 8 C 0.140 3.860 9 C -0.451 4.451 10 H 0.076 0.924 11 C 0.045 3.955 12 N -0.742 5.742 13 Si 0.996 3.004 14 H -0.255 1.255 15 H -0.239 1.239 16 H -0.257 1.257 17 C -0.210 4.210 18 N 0.025 4.975 19 O -0.192 6.192 20 O -0.192 6.192 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.124 0.876 24 H 0.159 0.841 25 H 0.144 0.856 26 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 3.539 0.946 6.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.261 6.261 3 C 0.171 3.829 4 C -0.341 4.341 5 C 0.022 3.978 6 Cl -0.036 7.036 7 C -0.208 4.208 8 C 0.135 3.865 9 C -0.475 4.475 10 H 0.094 0.906 11 C -0.184 4.184 12 N -0.360 5.360 13 Si 0.813 3.187 14 H -0.180 1.180 15 H -0.161 1.161 16 H -0.181 1.181 17 C -0.294 4.294 18 N 0.517 4.483 19 O -0.396 6.396 20 O -0.396 6.396 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.143 0.857 24 H 0.177 0.823 25 H 0.161 0.839 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.598 4.334 0.777 7.122 hybrid contribution 0.576 -0.295 0.015 0.647 sum -5.022 4.039 0.792 6.493 Atomic orbital electron populations 1.23433 0.75033 1.05847 1.02958 1.86054 1.25193 1.26471 1.88348 1.17936 0.87453 0.85657 0.91872 1.20347 0.99833 0.88232 1.25676 1.20532 0.91089 0.87086 0.99142 1.98296 1.71251 1.37318 1.96761 1.21116 0.90550 0.98116 1.10974 1.16967 0.94083 0.86915 0.88532 1.21220 0.90942 1.02565 1.32746 0.90569 1.28361 1.06624 0.92529 0.90916 1.69011 1.42267 1.08727 1.16040 0.84986 0.72999 0.80181 0.80562 1.17957 1.16148 1.18097 1.19757 0.87067 0.81326 1.41202 1.50242 0.95931 1.01520 1.00559 1.96125 1.60168 1.66989 1.16283 1.96113 1.60189 1.66860 1.16416 0.91161 0.90985 0.85743 0.82346 0.83857 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.66 15 2 O -0.35 -14.25 10.24 -92.46 -0.95 -15.20 15 3 C 0.22 9.96 6.67 22.45 0.15 10.11 15 4 C -0.32 -12.75 8.84 22.66 0.20 -12.55 15 5 C 0.05 2.01 6.31 22.26 0.14 2.15 15 6 Cl -0.07 -2.19 28.94 -2.72 -0.08 -2.27 15 7 C -0.19 -8.77 8.54 22.87 0.20 -8.57 15 8 C 0.14 7.25 5.61 -21.29 -0.12 7.13 15 9 C -0.45 -23.10 8.98 24.95 0.22 -22.87 15 10 H 0.08 4.07 7.63 -2.91 -0.02 4.05 15 11 C 0.05 1.97 5.35 87.20 0.47 2.43 15 12 N -0.74 -31.96 10.96 23.21 0.25 -31.71 15 13 Si 1.00 32.76 29.67 68.60 2.04 34.79 15 14 H -0.26 -8.30 7.11 99.48 0.71 -7.59 15 15 H -0.24 -6.80 7.11 99.48 0.71 -6.09 15 16 H -0.26 -8.76 7.11 99.48 0.71 -8.06 15 17 C -0.21 -10.99 6.32 37.03 0.23 -10.76 15 18 N 0.02 1.35 3.80 -44.92 -0.17 1.18 15 19 O -0.19 -10.49 19.97 3.51 0.07 -10.42 15 20 O -0.19 -10.29 19.97 3.51 0.07 -10.22 15 21 H 0.07 1.67 7.64 -2.39 -0.02 1.65 15 22 H 0.07 1.68 7.67 -2.38 -0.02 1.66 15 23 H 0.12 2.52 8.14 -2.39 -0.02 2.51 15 24 H 0.16 5.11 6.27 -2.91 -0.02 5.09 15 25 H 0.14 6.65 6.10 -2.91 -0.02 6.63 15 26 H 0.32 11.64 8.27 -92.70 -0.77 10.88 15 Total: -1.00 -59.46 262.99 5.08 -54.39 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.24 Total: 10.73 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 2.60 Total: -31.27 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.08 Total: -30.53 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.81 Total: -35.84 kcal Atomic # 14 Polarization: 32.76 SS G_CDS: 2.04 Total: 34.79 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -59.46 5.08 -54.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141315170.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.563 kcal (2) G-P(sol) polarization free energy of solvation -59.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds