Wall clock time and date at job start Mon Mar 30 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29023 * 124.92052 * 2 1 4 4 C 1.31782 * 117.12847 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.74963 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47055 * 25.02597 * 5 4 3 7 7 Si 1.63098 * 114.00018 * 150.00399 * 6 5 4 8 8 C 1.86297 * 109.47596 * 59.99437 * 7 6 5 9 9 C 1.86303 * 109.47262 * 180.02562 * 7 6 5 10 10 C 1.86303 * 109.46968 * 299.99528 * 7 6 5 11 11 C 1.50701 * 109.47064 * 265.02312 * 5 4 3 12 12 N 1.27937 * 120.00106 * 235.00069 * 11 5 4 13 13 Si 1.86802 * 119.99770 * 55.00300 * 11 5 4 14 14 H 1.48498 * 109.47252 * 359.97438 * 13 11 5 15 15 H 1.48497 * 109.47104 * 120.00060 * 13 11 5 16 16 H 1.48506 * 109.47048 * 239.99593 * 13 11 5 17 17 C 1.33639 * 114.50193 * 0.23378 * 4 3 2 18 18 S 1.70984 * 124.91576 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.46621 * 90.00067 * 1 2 3 20 20 H 1.08997 * 109.47270 * 210.00025 * 1 2 3 21 21 H 1.08999 * 109.47516 * 330.00401 * 1 2 3 22 22 H 1.09002 * 109.47152 * 145.02405 * 5 4 3 23 23 H 1.09002 * 109.46813 * 59.99962 * 8 7 6 24 24 H 1.08999 * 109.47394 * 180.02562 * 8 7 6 25 25 H 1.08998 * 109.46927 * 300.00352 * 8 7 6 26 26 H 1.08994 * 109.47283 * 59.99007 * 9 7 6 27 27 H 1.08999 * 109.47175 * 179.97438 * 9 7 6 28 28 H 1.09006 * 109.46532 * 299.99239 * 9 7 6 29 29 H 1.08998 * 109.47083 * 59.99937 * 10 7 6 30 30 H 1.08994 * 109.47598 * 180.02562 * 10 7 6 31 31 H 1.09002 * 109.47369 * 300.00584 * 10 7 6 32 32 H 0.97001 * 120.00269 * 180.02562 * 12 11 5 33 33 H 1.07998 * 126.04179 * 179.76915 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 8 3.9125 3.1803 0.5690 7 14 4.9518 4.1837 1.3262 8 6 6.2302 4.7855 0.1120 9 6 4.0172 5.6395 2.0176 10 6 5.7950 3.2717 2.7148 11 6 4.9514 2.3251 -1.4155 12 7 6.1924 2.3325 -1.7262 13 14 3.6606 2.6871 -2.7165 14 1 2.3089 2.6165 -2.1058 15 1 3.8838 4.0467 -3.2703 16 1 3.7632 1.6851 -3.8078 17 6 3.9354 -0.4007 -0.0040 18 16 2.4856 -1.4021 0.0006 19 1 -0.3633 0.0000 -1.0278 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 5.4067 1.7537 0.5896 23 1 5.7368 5.3190 -0.7004 24 1 6.9250 5.4556 0.6182 25 1 6.7769 3.9335 -0.2921 26 1 3.2695 5.2870 2.7280 27 1 4.7117 6.3098 2.5240 28 1 3.5235 6.1732 1.2054 29 1 6.3417 2.4197 2.3107 30 1 6.4892 3.9423 3.2212 31 1 5.0470 2.9195 3.4252 32 1 6.4632 2.5263 -2.6373 33 1 4.9545 -0.7582 -0.0079 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205615227.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:41 Heat of formation + Delta-G solvation = -9.741696 kcal Electronic energy + Delta-G solvation = -15731.540238 eV Core-core repulsion = 13235.966179 eV Total energy + Delta-G solvation = -2495.574059 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.073 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13590 -38.49338 -35.87773 -33.42135 -29.81524 -29.49867 -28.57487 -28.33868 -27.92102 -24.21973 -21.65494 -20.57193 -18.96325 -18.38313 -16.81013 -16.47770 -16.36691 -15.55448 -15.43460 -14.51208 -14.38098 -14.25500 -14.05819 -13.75522 -13.61070 -13.46861 -13.24203 -13.16910 -13.07134 -12.95995 -12.91739 -12.75811 -12.29767 -11.99100 -11.71993 -11.51305 -10.67312 -10.47809 -10.41290 -10.30570 -10.07150 -9.63831 -0.28831 0.38819 0.55115 0.73041 1.08148 1.46491 1.52843 1.73303 1.80459 1.91673 2.06444 2.10123 2.51241 3.06235 3.47080 3.90255 4.07189 4.25431 4.32414 4.48693 4.53843 4.65814 4.74161 4.76165 4.79992 4.80628 4.83607 4.91191 4.94402 5.16796 5.26472 5.53344 5.61722 5.70473 6.64263 6.86056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.046 3.954 3 N -0.437 5.437 4 C 0.068 3.932 5 C 0.232 3.768 6 O -0.596 6.596 7 Si 1.252 2.748 8 C -0.517 4.517 9 C -0.465 4.465 10 C -0.508 4.508 11 C -0.025 4.025 12 N -0.608 5.608 13 Si 0.911 3.089 14 H -0.202 1.202 15 H -0.239 1.239 16 H -0.246 1.246 17 C -0.251 4.251 18 S 0.126 5.874 19 H 0.087 0.913 20 H 0.082 0.918 21 H 0.092 0.908 22 H 0.096 0.904 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.344 0.656 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 -1.956 -0.281 2.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.233 4.233 3 N -0.152 5.152 4 C -0.066 4.066 5 C 0.171 3.829 6 O -0.552 6.552 7 Si 1.390 2.610 8 C -0.619 4.619 9 C -0.571 4.571 10 C -0.610 4.610 11 C -0.275 4.275 12 N -0.224 5.224 13 Si 0.725 3.275 14 H -0.123 1.123 15 H -0.163 1.163 16 H -0.170 1.170 17 C -0.390 4.390 18 S 0.381 5.619 19 H 0.106 0.894 20 H 0.100 0.900 21 H 0.111 0.889 22 H 0.114 0.886 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.162 0.838 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.572 -2.583 -0.434 3.055 hybrid contribution 1.137 1.007 -0.336 1.555 sum -0.435 -1.576 -0.769 1.807 Atomic orbital electron populations 1.20478 0.84845 1.04521 1.04111 1.27235 1.02129 0.90635 1.03258 1.66114 1.03723 1.30757 1.14585 1.19837 0.90432 0.92704 1.03616 1.18786 0.91328 0.82392 0.90440 1.85465 1.57066 1.38699 1.73968 0.77350 0.58538 0.62044 0.63117 1.27157 1.14355 1.07544 1.12862 1.26282 1.09041 1.14590 1.07203 1.26949 1.08815 1.09180 1.16028 1.30759 0.99512 0.93878 1.03319 1.68052 1.19247 1.08260 1.26812 0.85797 0.82660 0.81842 0.77168 1.12259 1.16252 1.17003 1.26824 1.03976 0.95647 1.12595 1.84142 0.97189 1.12706 1.67815 0.89436 0.89968 0.88891 0.88644 0.91535 0.91052 0.89577 0.90726 0.90559 0.90748 0.91327 0.90729 0.90985 0.83803 0.80128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.13 10.46 36.00 0.38 0.51 16 2 C 0.05 0.05 7.39 -13.46 -0.10 -0.05 16 3 N -0.44 -1.39 9.37 -8.06 -0.08 -1.47 16 4 C 0.07 0.14 4.76 -84.22 -0.40 -0.26 16 5 C 0.23 0.34 2.19 -29.03 -0.06 0.27 16 6 O -0.60 -1.11 7.64 -35.23 -0.27 -1.38 16 7 Si 1.25 -0.24 12.68 -169.99 -2.16 -2.40 16 8 C -0.52 -0.26 8.04 101.05 0.81 0.55 16 9 C -0.46 -0.06 8.65 101.05 0.87 0.81 16 10 C -0.51 -0.04 8.56 101.05 0.87 0.83 16 11 C -0.02 -0.03 3.96 -13.90 -0.05 -0.08 16 12 N -0.61 -0.38 11.80 56.22 0.66 0.29 16 13 Si 0.91 1.50 28.00 -169.99 -4.76 -3.26 16 14 H -0.20 -0.60 6.67 56.52 0.38 -0.22 16 15 H -0.24 -0.41 7.11 56.52 0.40 -0.01 16 16 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 17 C -0.25 -0.12 11.14 29.12 0.32 0.21 16 18 S 0.13 -0.02 23.18 -107.50 -2.49 -2.51 16 19 H 0.09 -0.22 8.14 -51.93 -0.42 -0.65 16 20 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 21 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 22 H 0.10 -0.01 6.12 -51.93 -0.32 -0.33 16 23 H 0.07 0.05 7.96 -51.93 -0.41 -0.36 16 24 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 25 H 0.09 0.09 5.71 -51.93 -0.30 -0.21 16 26 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 27 H 0.08 -0.05 7.96 -51.93 -0.41 -0.46 16 28 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 29 H 0.07 0.00 7.10 -51.93 -0.37 -0.37 16 30 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 31 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 32 H 0.34 -0.33 8.23 -40.82 -0.34 -0.67 16 33 H 0.18 -0.32 8.06 -52.49 -0.42 -0.74 16 LS Contribution 294.10 15.07 4.43 4.43 Total: 0.00 -4.08 294.10 -6.75 -10.83 By element: Atomic # 1 Polarization: -2.61 SS G_CDS: -4.72 Total: -7.33 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 2.63 Total: 2.79 kcal Atomic # 7 Polarization: -1.77 SS G_CDS: 0.59 Total: -1.18 kcal Atomic # 8 Polarization: -1.11 SS G_CDS: -0.27 Total: -1.38 kcal Atomic # 14 Polarization: 1.26 SS G_CDS: -6.92 Total: -5.66 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.49 Total: -2.51 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -4.08 -6.75 -10.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205615227.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.085 kcal (2) G-P(sol) polarization free energy of solvation -4.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds