Wall clock time and date at job start Mon Mar 30 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29023 * 124.92052 * 2 1 4 4 C 1.31782 * 117.12847 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.74963 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47055 * 25.02597 * 5 4 3 7 7 Si 1.63098 * 114.00018 * 150.00399 * 6 5 4 8 8 C 1.86297 * 109.47596 * 59.99437 * 7 6 5 9 9 C 1.86303 * 109.47262 * 180.02562 * 7 6 5 10 10 C 1.86303 * 109.46968 * 299.99528 * 7 6 5 11 11 C 1.50701 * 109.47064 * 265.02312 * 5 4 3 12 12 N 1.27937 * 120.00106 * 235.00069 * 11 5 4 13 13 Si 1.86802 * 119.99770 * 55.00300 * 11 5 4 14 14 H 1.48498 * 109.47252 * 359.97438 * 13 11 5 15 15 H 1.48497 * 109.47104 * 120.00060 * 13 11 5 16 16 H 1.48506 * 109.47048 * 239.99593 * 13 11 5 17 17 C 1.33639 * 114.50193 * 0.23378 * 4 3 2 18 18 S 1.70984 * 124.91576 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.46621 * 90.00067 * 1 2 3 20 20 H 1.08997 * 109.47270 * 210.00025 * 1 2 3 21 21 H 1.08999 * 109.47516 * 330.00401 * 1 2 3 22 22 H 1.09002 * 109.47152 * 145.02405 * 5 4 3 23 23 H 1.09002 * 109.46813 * 59.99962 * 8 7 6 24 24 H 1.08999 * 109.47394 * 180.02562 * 8 7 6 25 25 H 1.08998 * 109.46927 * 300.00352 * 8 7 6 26 26 H 1.08994 * 109.47283 * 59.99007 * 9 7 6 27 27 H 1.08999 * 109.47175 * 179.97438 * 9 7 6 28 28 H 1.09006 * 109.46532 * 299.99239 * 9 7 6 29 29 H 1.08998 * 109.47083 * 59.99937 * 10 7 6 30 30 H 1.08994 * 109.47598 * 180.02562 * 10 7 6 31 31 H 1.09002 * 109.47369 * 300.00584 * 10 7 6 32 32 H 0.97001 * 120.00269 * 180.02562 * 12 11 5 33 33 H 1.07998 * 126.04179 * 179.76915 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 8 3.9125 3.1803 0.5690 7 14 4.9518 4.1837 1.3262 8 6 6.2302 4.7855 0.1120 9 6 4.0172 5.6395 2.0176 10 6 5.7950 3.2717 2.7148 11 6 4.9514 2.3251 -1.4155 12 7 6.1924 2.3325 -1.7262 13 14 3.6606 2.6871 -2.7165 14 1 2.3089 2.6165 -2.1058 15 1 3.8838 4.0467 -3.2703 16 1 3.7632 1.6851 -3.8078 17 6 3.9354 -0.4007 -0.0040 18 16 2.4856 -1.4021 0.0006 19 1 -0.3633 0.0000 -1.0278 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 5.4067 1.7537 0.5896 23 1 5.7368 5.3190 -0.7004 24 1 6.9250 5.4556 0.6182 25 1 6.7769 3.9335 -0.2921 26 1 3.2695 5.2870 2.7280 27 1 4.7117 6.3098 2.5240 28 1 3.5235 6.1732 1.2054 29 1 6.3417 2.4197 2.3107 30 1 6.4892 3.9423 3.2212 31 1 5.0470 2.9195 3.4252 32 1 6.4632 2.5263 -2.6373 33 1 4.9545 -0.7582 -0.0079 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205615227.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:40 Heat of formation + Delta-G solvation = -1.491817 kcal Electronic energy + Delta-G solvation = -15731.182497 eV Core-core repulsion = 13235.966179 eV Total energy + Delta-G solvation = -2495.216318 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.16641 -38.54096 -35.93801 -33.38554 -29.79040 -29.50569 -28.57735 -28.35261 -27.93809 -24.21668 -21.69671 -20.59519 -18.98840 -18.42990 -16.84885 -16.51271 -16.42736 -15.56949 -15.41582 -14.63066 -14.30062 -14.27690 -14.07133 -13.76604 -13.60670 -13.41973 -13.23450 -13.13131 -13.05985 -12.97937 -12.91874 -12.78350 -12.38454 -12.12145 -11.78429 -11.56059 -10.68613 -10.50937 -10.44506 -10.32752 -10.12101 -9.64601 -0.29365 0.40992 0.48091 0.72018 0.97632 1.34352 1.41918 1.67188 1.75583 1.91446 1.94847 2.10590 2.50370 3.09592 3.46124 3.90667 4.07575 4.31163 4.36929 4.61686 4.64204 4.70398 4.75112 4.76475 4.78844 4.80474 4.81690 4.89316 5.01601 5.23074 5.25820 5.53418 5.61421 5.67322 6.62742 6.84996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.031 3.969 3 N -0.470 5.470 4 C 0.048 3.952 5 C 0.226 3.774 6 O -0.612 6.612 7 Si 1.279 2.721 8 C -0.521 4.521 9 C -0.474 4.474 10 C -0.511 4.511 11 C -0.022 4.022 12 N -0.606 5.606 13 Si 0.924 3.076 14 H -0.224 1.224 15 H -0.243 1.243 16 H -0.249 1.249 17 C -0.253 4.253 18 S 0.152 5.848 19 H 0.096 0.904 20 H 0.100 0.900 21 H 0.087 0.913 22 H 0.110 0.890 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.353 0.647 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 -2.536 -0.133 2.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.247 4.247 3 N -0.185 5.185 4 C -0.085 4.085 5 C 0.165 3.835 6 O -0.568 6.568 7 Si 1.415 2.585 8 C -0.623 4.623 9 C -0.580 4.580 10 C -0.613 4.613 11 C -0.273 4.273 12 N -0.222 5.222 13 Si 0.740 3.260 14 H -0.146 1.146 15 H -0.166 1.166 16 H -0.173 1.173 17 C -0.393 4.393 18 S 0.408 5.592 19 H 0.114 0.886 20 H 0.119 0.881 21 H 0.106 0.894 22 H 0.127 0.873 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.085 -3.159 -0.298 3.354 hybrid contribution 0.964 1.167 -0.393 1.564 sum -0.121 -1.993 -0.691 2.112 Atomic orbital electron populations 1.20596 0.83421 1.05178 1.04844 1.27672 1.03247 0.90911 1.02832 1.66119 1.04497 1.32073 1.15827 1.20005 0.90390 0.93476 1.04610 1.18923 0.91705 0.82262 0.90609 1.85457 1.58003 1.39117 1.74242 0.76886 0.57794 0.61305 0.62500 1.27218 1.14635 1.07494 1.12970 1.26381 1.09256 1.15137 1.07187 1.26980 1.08897 1.09420 1.16030 1.30603 0.99256 0.94270 1.03133 1.68024 1.18839 1.07847 1.27512 0.85608 0.81808 0.81454 0.77129 1.14564 1.16608 1.17284 1.27123 1.05208 0.95363 1.11611 1.83986 0.96456 1.11669 1.67123 0.88595 0.88141 0.89381 0.87266 0.91936 0.90558 0.89952 0.91071 0.89720 0.91068 0.91068 0.90237 0.91362 0.82860 0.78200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.24 10.46 71.23 0.75 0.99 16 2 C 0.03 0.08 7.39 88.52 0.65 0.74 16 3 N -0.47 -3.41 9.37 -179.40 -1.68 -5.09 16 4 C 0.05 0.23 4.76 41.52 0.20 0.42 16 5 C 0.23 0.73 2.19 29.10 0.06 0.79 16 6 O -0.61 -2.72 7.64 -148.98 -1.14 -3.86 16 7 Si 1.28 -0.15 12.68 68.60 0.87 0.72 16 8 C -0.52 -0.51 8.04 113.37 0.91 0.40 16 9 C -0.47 -0.34 8.65 113.37 0.98 0.64 16 10 C -0.51 0.02 8.56 113.37 0.97 0.99 16 11 C -0.02 -0.06 3.96 88.68 0.35 0.29 16 12 N -0.61 -0.61 11.80 24.11 0.28 -0.32 16 13 Si 0.92 3.88 28.00 68.60 1.92 5.80 16 14 H -0.22 -1.76 6.67 99.48 0.66 -1.09 16 15 H -0.24 -1.04 7.11 99.48 0.71 -0.33 16 16 H -0.25 -1.05 7.11 99.48 0.71 -0.35 16 17 C -0.25 -0.18 11.14 66.78 0.74 0.57 16 18 S 0.15 -0.09 23.18 -56.49 -1.31 -1.39 16 19 H 0.10 -0.47 8.14 -2.38 -0.02 -0.49 16 20 H 0.10 -0.72 8.14 -2.39 -0.02 -0.73 16 21 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 22 H 0.11 -0.05 6.12 -2.39 -0.01 -0.06 16 23 H 0.06 0.11 7.96 -2.39 -0.02 0.09 16 24 H 0.08 -0.01 7.96 -2.39 -0.02 -0.03 16 25 H 0.08 0.15 5.71 -2.39 -0.01 0.14 16 26 H 0.07 0.10 7.96 -2.39 -0.02 0.08 16 27 H 0.08 -0.11 7.96 -2.39 -0.02 -0.12 16 28 H 0.07 0.09 7.96 -2.38 -0.02 0.07 16 29 H 0.07 -0.04 7.10 -2.39 -0.02 -0.06 16 30 H 0.08 -0.08 7.96 -2.39 -0.02 -0.10 16 31 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 32 H 0.35 -0.76 8.23 -92.71 -0.76 -1.53 16 33 H 0.20 -0.89 8.06 -2.91 -0.02 -0.91 16 Total: 0.00 -9.53 294.10 5.62 -3.91 By element: Atomic # 1 Polarization: -6.64 SS G_CDS: 1.05 Total: -5.59 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.62 Total: 5.83 kcal Atomic # 7 Polarization: -4.02 SS G_CDS: -1.40 Total: -5.42 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: -1.14 Total: -3.86 kcal Atomic # 14 Polarization: 3.73 SS G_CDS: 2.79 Total: 6.52 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.31 Total: -1.39 kcal Total: -9.53 5.62 -3.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205615227.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.422 kcal (2) G-P(sol) polarization free energy of solvation -9.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds