Wall clock time and date at job start Mon Mar 30 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47272 * 29.64790 * 3 2 1 5 5 C 1.37030 * 125.00668 * 264.97092 * 4 3 2 6 6 C 1.35212 * 109.72997 * 180.02562 * 5 4 3 7 7 S 1.76202 * 126.58789 * 180.02562 * 6 5 4 8 8 C 1.76200 * 99.99955 * 359.97438 * 7 6 5 9 9 H 1.08004 * 119.99700 * 0.02562 * 8 7 6 10 10 C 1.38545 * 119.99727 * 179.97438 * 8 7 6 11 11 N 1.31751 * 120.00246 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99767 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47025 * 89.99875 * 12 10 8 14 14 H 1.48497 * 109.47142 * 210.00127 * 12 10 8 15 15 H 1.48493 * 109.47092 * 330.00289 * 12 10 8 16 16 C 1.46893 * 106.82388 * 359.97438 * 6 5 4 17 17 C 1.39514 * 133.93130 * 179.97438 * 16 6 5 18 18 C 1.36685 * 119.78033 * 180.02562 * 17 16 6 19 19 C 1.38797 * 120.50301 * 359.97438 * 18 17 16 20 20 C 1.37767 * 120.65006 * 359.97438 * 19 18 17 21 21 C 1.37758 * 125.00204 * 85.00338 * 4 3 2 22 22 H 4.40636 * 5.51461 * 180.02562 * 4 1 2 23 23 H 1.09004 * 109.47007 * 269.64537 * 3 2 1 24 24 H 1.08998 * 109.47045 * 149.65312 * 3 2 1 25 25 H 1.07994 * 125.13318 * 0.05074 * 5 4 3 26 26 H 0.97007 * 119.99964 * 179.97438 * 11 10 8 27 27 H 1.07996 * 120.10791 * 0.33116 * 17 16 6 28 28 H 1.08003 * 119.74522 * 179.97438 * 18 17 16 29 29 H 1.08002 * 119.67575 * 180.02562 * 19 18 17 30 30 H 1.08007 * 120.10787 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1995 -0.6832 5 6 3.4902 -2.3680 -0.0619 6 6 3.8965 -3.2698 -0.9837 7 16 4.4488 -4.9138 -0.6724 8 6 4.2998 -4.9595 1.0827 9 1 3.9421 -4.0917 1.6169 10 6 4.6405 -6.1089 1.7771 11 7 5.0754 -7.1679 1.1252 12 14 4.4818 -6.1575 3.6378 13 1 3.1249 -6.6351 4.0066 14 1 5.5009 -7.0812 4.1975 15 1 4.6934 -4.7947 4.1884 16 6 3.7879 -2.6162 -2.2947 17 6 4.0546 -3.0206 -3.6031 18 6 3.8445 -2.1529 -4.6381 19 6 3.3672 -0.8720 -4.3977 20 6 3.0964 -0.4529 -3.1135 21 6 3.3057 -1.3192 -2.0449 22 1 -1.0498 -0.0003 -0.0004 23 1 3.0093 0.0072 1.0277 24 1 3.0089 0.8877 -0.5192 25 1 3.4512 -2.5424 1.0031 26 1 5.3143 -7.9726 1.6115 27 1 4.4211 -4.0177 -3.7978 28 1 4.0516 -2.4665 -5.6506 29 1 3.2056 -0.1974 -5.2255 30 1 2.7248 0.5457 -2.9365 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000206628133.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:53 Heat of formation + Delta-G solvation = 113.176808 kcal Electronic energy + Delta-G solvation = -15495.380464 eV Core-core repulsion = 12962.894763 eV Total energy + Delta-G solvation = -2532.485701 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65465 -36.71959 -34.10684 -32.59722 -31.56701 -29.76132 -28.47775 -26.30927 -25.50736 -22.18939 -21.19342 -20.20348 -18.47311 -17.83713 -16.62767 -15.80619 -15.16254 -15.05891 -14.81343 -14.32479 -13.70402 -13.47635 -13.14165 -12.99348 -12.82382 -12.13474 -11.33621 -11.18930 -11.07714 -11.03092 -10.97367 -10.68395 -10.42767 -10.30777 -9.85977 -9.71135 -9.05880 -8.55209 -7.79237 -7.67101 -6.37801 -6.14402 -4.03296 1.61204 2.04335 2.43473 2.73359 3.13832 3.15386 3.22818 3.31100 3.42053 3.77595 4.18780 4.26225 4.42411 4.99154 5.02601 5.10392 5.25306 5.26569 5.41964 5.46878 5.57481 5.80527 5.93093 6.09342 6.20465 6.36789 6.56809 6.87450 7.04419 7.18568 7.36910 7.49807 7.51442 7.71205 7.85344 8.23852 9.09735 10.69674 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.006765 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.840454 B = 4137.711175 C = 5311.819784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.210 4.210 3 C 0.227 3.773 4 N -0.483 5.483 5 C 0.011 3.989 6 C -0.154 4.154 7 S 0.053 5.947 8 C -0.538 4.538 9 H 0.080 0.920 10 C 0.075 3.925 11 N -0.869 5.869 12 Si 0.921 3.079 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.271 1.271 16 C -0.086 4.086 17 C -0.058 4.058 18 C -0.164 4.164 19 C -0.104 4.104 20 C -0.140 4.140 21 C 0.108 3.892 22 H 0.219 0.781 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.168 0.832 26 H 0.271 0.729 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 13.036 -4.708 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.211 4.211 3 C 0.105 3.895 4 N -0.169 5.169 5 C -0.123 4.123 6 C -0.273 4.273 7 S 0.301 5.699 8 C -0.685 4.685 9 H 0.098 0.902 10 C -0.134 4.134 11 N -0.504 5.504 12 Si 0.747 3.253 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.195 1.195 16 C -0.094 4.094 17 C -0.077 4.077 18 C -0.184 4.184 19 C -0.123 4.123 20 C -0.162 4.162 21 C 0.001 3.999 22 H 0.235 0.765 23 H 0.128 0.872 24 H 0.120 0.880 25 H 0.185 0.815 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.274 12.017 -5.195 13.772 hybrid contribution -0.850 0.966 2.136 2.493 sum -5.123 12.983 -3.058 14.288 Atomic orbital electron populations 1.24950 0.95917 0.98763 1.00047 1.23503 0.94903 1.01640 1.01103 1.18374 0.83880 0.87865 0.99372 1.43731 1.57207 1.11926 1.04038 1.21753 1.07850 0.84508 0.98222 1.23184 1.09082 1.02221 0.92805 1.83205 1.77075 1.01056 1.08516 1.22975 1.51344 1.02688 0.91528 0.90165 1.25004 0.94044 0.94524 0.99876 1.70035 1.40937 1.03024 1.36367 0.86114 0.78228 0.78370 0.82574 1.20112 1.20592 1.19526 1.18870 1.04834 0.92968 0.92728 1.20313 0.97485 0.99382 0.90475 1.20477 1.05069 0.94422 0.98408 1.20641 1.00225 0.96270 0.95204 1.19868 1.06912 0.98444 0.90930 1.18231 1.02219 0.95862 0.83611 0.76455 0.87247 0.87964 0.81470 0.91896 0.86026 0.86597 0.86561 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 19.25 29.55 0.57 -1.64 16 2 C -0.21 -2.92 13.68 -37.12 -0.51 -3.43 16 3 C 0.23 3.00 6.47 -6.83 -0.04 2.96 16 4 N -0.48 -8.57 2.74 -117.21 -0.32 -8.90 16 5 C 0.01 0.22 10.49 -16.31 -0.17 0.05 16 6 C -0.15 -3.55 6.54 -37.16 -0.24 -3.79 16 7 S 0.05 1.40 21.89 -107.50 -2.35 -0.96 16 8 C -0.54 -14.76 9.23 30.85 0.28 -14.48 16 9 H 0.08 2.09 5.50 -52.48 -0.29 1.80 16 10 C 0.07 2.05 5.49 -17.47 -0.10 1.95 16 11 N -0.87 -24.94 13.22 55.48 0.73 -24.21 16 12 Si 0.92 20.77 29.55 -169.99 -5.02 15.75 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 16 C -0.09 -1.78 6.37 -105.03 -0.67 -2.45 16 17 C -0.06 -1.05 10.05 -39.67 -0.40 -1.45 16 18 C -0.16 -2.49 9.98 -39.94 -0.40 -2.89 16 19 C -0.10 -1.49 10.01 -39.55 -0.40 -1.88 16 20 C -0.14 -2.17 9.99 -39.41 -0.39 -2.56 16 21 C 0.11 2.00 6.80 -83.97 -0.57 1.43 16 22 H 0.22 1.87 7.80 -54.10 -0.42 1.45 16 23 H 0.11 1.23 8.12 -51.93 -0.42 0.81 16 24 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.17 3.43 6.07 -52.49 -0.32 3.11 16 26 H 0.27 7.25 8.32 -40.82 -0.34 6.91 16 27 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 289.25 15.07 4.36 4.36 Total: -1.00 -31.52 289.25 -8.34 -39.86 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -2.70 Total: 2.28 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -3.04 Total: -28.18 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.41 Total: -33.11 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.35 Total: -0.96 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.52 -8.34 -39.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206628133.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.039 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds