Wall clock time and date at job start Mon Mar 30 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47272 * 29.64790 * 3 2 1 5 5 C 1.37030 * 125.00668 * 264.97092 * 4 3 2 6 6 C 1.35212 * 109.72997 * 180.02562 * 5 4 3 7 7 S 1.76202 * 126.58789 * 180.02562 * 6 5 4 8 8 C 1.76200 * 99.99955 * 359.97438 * 7 6 5 9 9 H 1.08004 * 119.99700 * 0.02562 * 8 7 6 10 10 C 1.38545 * 119.99727 * 179.97438 * 8 7 6 11 11 N 1.31751 * 120.00246 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99767 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47025 * 89.99875 * 12 10 8 14 14 H 1.48497 * 109.47142 * 210.00127 * 12 10 8 15 15 H 1.48493 * 109.47092 * 330.00289 * 12 10 8 16 16 C 1.46893 * 106.82388 * 359.97438 * 6 5 4 17 17 C 1.39514 * 133.93130 * 179.97438 * 16 6 5 18 18 C 1.36685 * 119.78033 * 180.02562 * 17 16 6 19 19 C 1.38797 * 120.50301 * 359.97438 * 18 17 16 20 20 C 1.37767 * 120.65006 * 359.97438 * 19 18 17 21 21 C 1.37758 * 125.00204 * 85.00338 * 4 3 2 22 22 H 4.40636 * 5.51461 * 180.02562 * 4 1 2 23 23 H 1.09004 * 109.47007 * 269.64537 * 3 2 1 24 24 H 1.08998 * 109.47045 * 149.65312 * 3 2 1 25 25 H 1.07994 * 125.13318 * 0.05074 * 5 4 3 26 26 H 0.97007 * 119.99964 * 179.97438 * 11 10 8 27 27 H 1.07996 * 120.10791 * 0.33116 * 17 16 6 28 28 H 1.08003 * 119.74522 * 179.97438 * 18 17 16 29 29 H 1.08002 * 119.67575 * 180.02562 * 19 18 17 30 30 H 1.08007 * 120.10787 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1995 -0.6832 5 6 3.4902 -2.3680 -0.0619 6 6 3.8965 -3.2698 -0.9837 7 16 4.4488 -4.9138 -0.6724 8 6 4.2998 -4.9595 1.0827 9 1 3.9421 -4.0917 1.6169 10 6 4.6405 -6.1089 1.7771 11 7 5.0754 -7.1679 1.1252 12 14 4.4818 -6.1575 3.6378 13 1 3.1249 -6.6351 4.0066 14 1 5.5009 -7.0812 4.1975 15 1 4.6934 -4.7947 4.1884 16 6 3.7879 -2.6162 -2.2947 17 6 4.0546 -3.0206 -3.6031 18 6 3.8445 -2.1529 -4.6381 19 6 3.3672 -0.8720 -4.3977 20 6 3.0964 -0.4529 -3.1135 21 6 3.3057 -1.3192 -2.0449 22 1 -1.0498 -0.0003 -0.0004 23 1 3.0093 0.0072 1.0277 24 1 3.0089 0.8877 -0.5192 25 1 3.4512 -2.5424 1.0031 26 1 5.3143 -7.9726 1.6115 27 1 4.4211 -4.0177 -3.7978 28 1 4.0516 -2.4665 -5.6506 29 1 3.2056 -0.1974 -5.2255 30 1 2.7248 0.5457 -2.9365 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000206628133.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:53 Heat of formation + Delta-G solvation = 96.450012 kcal Electronic energy + Delta-G solvation = -15496.105793 eV Core-core repulsion = 12962.894763 eV Total energy + Delta-G solvation = -2533.211030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.05511 -37.99298 -35.23706 -34.66526 -32.81381 -30.98353 -29.92291 -27.82517 -27.26390 -23.55538 -22.57548 -21.64393 -19.87833 -19.34631 -17.98393 -17.25728 -16.90825 -16.34596 -16.20443 -15.81464 -15.05525 -14.89042 -14.51978 -14.39069 -14.13443 -13.67062 -13.08833 -12.98487 -12.74079 -12.47845 -12.37196 -12.07889 -11.66425 -11.50040 -11.44603 -11.26649 -10.79519 -10.54262 -9.37212 -9.04083 -8.42318 -7.99707 -6.12516 0.25534 0.74970 1.24025 1.33232 1.38726 1.48969 1.73142 1.75779 1.80930 2.22600 2.53228 2.94747 3.04608 3.26604 3.39209 3.84795 3.94470 4.04159 4.21780 4.30575 4.41622 4.67163 4.75809 4.80159 4.93236 5.03978 5.20270 5.41591 5.59856 5.73225 5.82238 5.92929 6.15921 6.29907 6.47634 6.55856 7.00806 8.67139 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.006765 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.840454 B = 4137.711175 C = 5311.819784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.251 4.251 3 C 0.221 3.779 4 N -0.478 5.478 5 C 0.022 3.978 6 C -0.187 4.187 7 S -0.018 6.018 8 C -0.550 4.550 9 H 0.085 0.915 10 C 0.019 3.981 11 N -0.909 5.909 12 Si 0.995 3.005 13 H -0.268 1.268 14 H -0.274 1.274 15 H -0.260 1.260 16 C -0.122 4.122 17 C -0.087 4.087 18 C -0.150 4.150 19 C -0.093 4.093 20 C -0.136 4.136 21 C 0.097 3.903 22 H 0.250 0.750 23 H 0.125 0.875 24 H 0.133 0.867 25 H 0.165 0.835 26 H 0.274 0.726 27 H 0.110 0.890 28 H 0.148 0.852 29 H 0.162 0.838 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 16.114 -5.101 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.252 4.252 3 C 0.101 3.899 4 N -0.163 5.163 5 C -0.112 4.112 6 C -0.306 4.306 7 S 0.227 5.773 8 C -0.697 4.697 9 H 0.103 0.897 10 C -0.186 4.186 11 N -0.545 5.545 12 Si 0.817 3.183 13 H -0.194 1.194 14 H -0.199 1.199 15 H -0.184 1.184 16 C -0.130 4.130 17 C -0.106 4.106 18 C -0.170 4.170 19 C -0.112 4.112 20 C -0.156 4.156 21 C -0.011 4.011 22 H 0.266 0.734 23 H 0.142 0.858 24 H 0.150 0.850 25 H 0.182 0.818 26 H 0.083 0.917 27 H 0.128 0.872 28 H 0.166 0.834 29 H 0.180 0.820 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.662 15.179 -5.610 17.144 hybrid contribution -0.516 0.195 2.081 2.153 sum -6.177 15.373 -3.529 16.940 Atomic orbital electron populations 1.25831 0.96889 0.96954 0.98495 1.23777 0.95556 1.03274 1.02625 1.18757 0.84055 0.86801 1.00336 1.43910 1.56361 1.12013 1.04054 1.21726 1.06140 0.85537 0.97846 1.23025 1.11760 1.00696 0.95164 1.83153 1.79494 1.05434 1.09199 1.23268 1.51460 1.03196 0.91819 0.89720 1.26040 0.93465 0.93900 1.05156 1.70172 1.42173 1.03743 1.38422 0.84994 0.78455 0.78883 0.75983 1.19357 1.19862 1.18351 1.19113 1.06932 0.94260 0.92686 1.20456 0.99337 0.99994 0.90825 1.20897 1.02852 0.94322 0.98915 1.21198 0.97766 0.96149 0.96094 1.20322 1.05723 0.99271 0.90330 1.18583 1.02466 0.95571 0.84476 0.73403 0.85758 0.84962 0.81810 0.91661 0.87224 0.83416 0.82020 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 19.25 74.32 1.43 -2.15 16 2 C -0.25 -6.37 13.68 31.13 0.43 -5.94 16 3 C 0.22 5.34 6.47 84.57 0.55 5.89 16 4 N -0.48 -16.54 2.74 -524.75 -1.44 -17.98 16 5 C 0.02 0.93 10.49 83.18 0.87 1.81 16 6 C -0.19 -9.06 6.54 23.84 0.16 -8.90 16 7 S -0.02 -1.01 21.89 -56.49 -1.24 -2.25 16 8 C -0.55 -31.50 9.23 67.89 0.63 -30.87 16 9 H 0.08 4.58 5.50 -2.91 -0.02 4.56 16 10 C 0.02 1.09 5.49 84.78 0.47 1.55 16 11 N -0.91 -54.25 13.22 21.61 0.29 -53.96 16 12 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 14 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 16 C -0.12 -5.17 6.37 -20.13 -0.13 -5.29 16 17 C -0.09 -3.23 10.05 22.21 0.22 -3.01 16 18 C -0.15 -4.19 9.98 22.04 0.22 -3.97 16 19 C -0.09 -2.24 10.01 22.29 0.22 -2.01 16 20 C -0.14 -3.68 9.99 22.38 0.22 -3.46 16 21 C 0.10 3.44 6.80 39.01 0.27 3.70 16 22 H 0.25 3.36 7.80 -4.43 -0.03 3.32 16 23 H 0.12 2.57 8.12 -2.39 -0.02 2.55 16 24 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.16 6.94 6.07 -2.91 -0.02 6.93 16 26 H 0.27 15.15 8.32 -92.70 -0.77 14.38 16 27 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -72.52 289.25 6.34 -66.19 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.15 Total: 15.39 kcal Atomic # 6 Polarization: -58.21 SS G_CDS: 5.55 Total: -52.66 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.15 Total: -71.94 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -1.24 Total: -2.25 kcal Total: -72.52 6.34 -66.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206628133.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.635 kcal (2) G-P(sol) polarization free energy of solvation -72.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds