Wall clock time and date at job start Mon Mar 30 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86803 * 119.99723 * 2 1 4 4 H 1.48494 * 109.47046 * 274.98112 * 3 2 1 5 5 H 1.48500 * 109.47046 * 34.98492 * 3 2 1 6 6 H 1.48502 * 109.46647 * 154.98484 * 3 2 1 7 7 C 1.40051 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99929 * 186.44462 * 7 2 1 9 9 C 1.39977 * 119.99961 * 6.44995 * 7 2 1 10 10 S 1.76213 * 126.25892 * 353.53523 * 9 7 2 11 11 C 1.70871 * 90.46947 * 179.97438 * 10 9 7 12 12 C 1.50700 * 124.53408 * 180.02562 * 11 10 9 13 13 C 1.54265 * 110.03294 * 237.15148 * 12 11 10 14 14 C 1.54890 * 104.19833 * 217.10895 * 13 12 11 15 15 C 1.54893 * 102.74726 * 37.94230 * 14 13 12 16 16 C 1.53879 * 110.03048 * 119.98959 * 12 11 10 17 17 N 1.29492 * 110.92297 * 0.02562 * 11 10 9 18 18 C 1.30767 * 117.63409 * 0.02562 * 17 11 10 19 19 Cl 1.73602 * 123.25928 * 179.97438 * 18 17 11 20 20 H 0.96997 * 120.00099 * 0.02562 * 1 2 3 21 21 H 1.08999 * 110.02457 * 358.59864 * 12 11 10 22 22 H 1.09003 * 110.48628 * 335.78692 * 13 12 11 23 23 H 1.08997 * 110.48560 * 98.43234 * 13 12 11 24 24 H 1.09000 * 110.75665 * 279.62584 * 14 13 12 25 25 H 1.09001 * 110.75606 * 156.25534 * 14 13 12 26 26 H 1.08992 * 110.48565 * 203.37463 * 15 14 13 27 27 H 1.09003 * 110.59646 * 80.79073 * 15 14 13 28 28 H 1.08996 * 110.03004 * 238.56895 * 16 12 11 29 29 H 1.08999 * 110.03127 * 359.95127 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3851 2.1072 -1.3947 5 1 1.4969 2.6200 0.8028 6 1 3.5892 1.4121 0.5921 7 6 2.0093 -1.2129 0.0005 8 1 3.0841 -1.2157 0.1055 9 6 1.3160 -2.4213 -0.1351 10 16 -0.4345 -2.6219 -0.1567 11 6 -0.2528 -4.3102 -0.3476 12 6 -1.3964 -5.2854 -0.4577 13 6 -1.2852 -6.3570 0.6465 14 6 -1.7609 -7.6612 -0.0405 15 6 -1.1744 -7.5291 -1.4679 16 6 -1.3259 -6.0308 -1.8021 17 7 0.9990 -4.6392 -0.3850 18 6 1.8817 -3.6806 -0.2762 19 17 3.5954 -3.9562 -0.3069 20 1 -0.4850 0.8400 -0.0004 21 1 -2.3464 -4.7578 -0.3727 22 1 -0.2520 -6.4561 0.9793 23 1 -1.9352 -6.1089 1.4856 24 1 -2.8495 -7.7059 -0.0727 25 1 -1.3522 -8.5357 0.4658 26 1 -1.7433 -8.1364 -2.1718 27 1 -0.1234 -7.8180 -1.4789 28 1 -2.2420 -5.8654 -2.3691 29 1 -0.4651 -5.6864 -2.3752 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222089221.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:28 Heat of formation + Delta-G solvation = -14.813189 kcal Electronic energy + Delta-G solvation = -14640.595738 eV Core-core repulsion = 12100.127125 eV Total energy + Delta-G solvation = -2540.468614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.25745 -36.71668 -34.83015 -34.32518 -30.14125 -28.50925 -28.14415 -24.68598 -22.83137 -20.26224 -19.97286 -18.62401 -17.32925 -16.14736 -15.54528 -14.98521 -14.39499 -13.78989 -13.20659 -12.96140 -12.75388 -12.51185 -12.03917 -11.63305 -11.39250 -11.03217 -10.77226 -10.65891 -10.55879 -10.44414 -10.22230 -10.15384 -10.01610 -9.91098 -9.73899 -9.38916 -7.97642 -7.88599 -7.18271 -7.14642 -4.70416 2.35506 2.84320 2.91346 2.96509 3.00587 3.51034 3.67991 4.05334 4.17575 4.81306 5.16091 5.22439 5.28407 5.88768 5.96870 6.04763 6.07531 6.13513 6.24399 6.36270 6.40639 6.55360 6.62777 6.76219 6.87086 6.89714 7.05561 7.47296 7.75835 8.03454 8.20868 9.50987 9.61476 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.029011 B = 0.007057 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.917253 B = 3966.929473 C = 4695.363322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.049 3.951 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.354 4.354 8 H 0.104 0.896 9 C 0.007 3.993 10 S 0.141 5.859 11 C -0.153 4.153 12 C 0.020 3.980 13 C -0.110 4.110 14 C -0.123 4.123 15 C -0.119 4.119 16 C -0.110 4.110 17 N -0.419 5.419 18 C -0.086 4.086 19 Cl -0.079 7.079 20 H 0.300 0.700 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -2.642 -0.397 4.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.391 4.391 8 H 0.122 0.878 9 C -0.118 4.118 10 S 0.393 5.607 11 C -0.424 4.424 12 C -0.002 4.002 13 C -0.149 4.149 14 C -0.161 4.161 15 C -0.156 4.156 16 C -0.149 4.149 17 N -0.132 5.132 18 C -0.245 4.245 19 Cl -0.051 7.051 20 H 0.113 0.887 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.056 -2.535 -0.396 4.799 hybrid contribution 1.523 0.542 -0.064 1.618 sum -2.533 -1.993 -0.459 3.256 Atomic orbital electron populations 1.69027 1.07745 1.31140 1.31345 1.26291 0.95220 1.02950 0.92926 0.85739 0.80298 0.78212 0.79669 1.18799 1.19540 1.17838 1.19293 0.96350 0.88385 1.35086 0.87771 1.22819 0.94874 0.95589 0.98504 1.84101 1.04182 0.99419 1.72994 1.25488 0.93245 0.99180 1.24471 1.19782 0.93352 0.92804 0.94271 1.22412 1.01781 0.93605 0.97090 1.22477 0.99579 0.97814 0.96220 1.22290 1.00727 0.96510 0.96107 1.22161 1.01081 0.94382 0.97230 1.64372 1.00609 1.37127 1.11105 1.19802 0.84559 0.88223 1.31950 1.98178 1.11612 1.96934 1.98415 0.88749 0.91434 0.90811 0.92606 0.92183 0.92336 0.92764 0.91730 0.92892 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.59 10.80 55.56 0.60 -16.99 15 2 C 0.05 1.10 5.49 -17.27 -0.09 1.01 15 3 Si 0.94 16.91 29.57 -169.99 -5.03 11.88 15 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 6 H -0.25 -4.58 7.11 56.52 0.40 -4.17 15 7 C -0.35 -8.76 9.05 -38.25 -0.35 -9.11 15 8 H 0.10 2.50 7.50 -52.49 -0.39 2.10 15 9 C 0.01 0.17 6.25 -38.74 -0.24 -0.07 15 10 S 0.14 3.40 20.25 -107.50 -2.18 1.22 15 11 C -0.15 -3.56 5.64 -13.26 -0.07 -3.64 15 12 C 0.02 0.38 3.39 -90.65 -0.31 0.07 15 13 C -0.11 -1.91 6.35 -25.07 -0.16 -2.07 15 14 C -0.12 -1.77 6.91 -24.74 -0.17 -1.94 15 15 C -0.12 -1.80 6.83 -25.07 -0.17 -1.98 15 16 C -0.11 -1.91 6.44 -25.61 -0.17 -2.07 15 17 N -0.42 -10.61 10.12 -7.96 -0.08 -10.69 15 18 C -0.09 -2.23 7.49 -17.81 -0.13 -2.36 15 19 Cl -0.08 -1.83 28.62 -51.86 -1.48 -3.31 15 20 H 0.30 6.12 8.30 -40.82 -0.34 5.78 15 21 H 0.07 1.21 8.13 -51.93 -0.42 0.79 15 22 H 0.07 1.46 7.60 -51.93 -0.39 1.07 15 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 29 H 0.07 1.34 7.63 -51.93 -0.40 0.94 15 LS Contribution 272.50 15.07 4.11 4.11 Total: -1.00 -26.36 272.50 -9.20 -35.56 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -3.28 Total: 0.36 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.86 Total: -22.15 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.52 Total: -27.68 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.18 Total: 1.22 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.48 Total: -3.31 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.36 -9.20 -35.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222089221.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.747 kcal (2) G-P(sol) polarization free energy of solvation -26.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds