Wall clock time and date at job start Mon Mar 30 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86803 * 119.99723 * 2 1 4 4 H 1.48494 * 109.47046 * 274.98112 * 3 2 1 5 5 H 1.48500 * 109.47046 * 34.98492 * 3 2 1 6 6 H 1.48502 * 109.46647 * 154.98484 * 3 2 1 7 7 C 1.40051 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99929 * 186.44462 * 7 2 1 9 9 C 1.39977 * 119.99961 * 6.44995 * 7 2 1 10 10 S 1.76213 * 126.25892 * 353.53523 * 9 7 2 11 11 C 1.70871 * 90.46947 * 179.97438 * 10 9 7 12 12 C 1.50700 * 124.53408 * 180.02562 * 11 10 9 13 13 C 1.54265 * 110.03294 * 237.15148 * 12 11 10 14 14 C 1.54890 * 104.19833 * 217.10895 * 13 12 11 15 15 C 1.54893 * 102.74726 * 37.94230 * 14 13 12 16 16 C 1.53879 * 110.03048 * 119.98959 * 12 11 10 17 17 N 1.29492 * 110.92297 * 0.02562 * 11 10 9 18 18 C 1.30767 * 117.63409 * 0.02562 * 17 11 10 19 19 Cl 1.73602 * 123.25928 * 179.97438 * 18 17 11 20 20 H 0.96997 * 120.00099 * 0.02562 * 1 2 3 21 21 H 1.08999 * 110.02457 * 358.59864 * 12 11 10 22 22 H 1.09003 * 110.48628 * 335.78692 * 13 12 11 23 23 H 1.08997 * 110.48560 * 98.43234 * 13 12 11 24 24 H 1.09000 * 110.75665 * 279.62584 * 14 13 12 25 25 H 1.09001 * 110.75606 * 156.25534 * 14 13 12 26 26 H 1.08992 * 110.48565 * 203.37463 * 15 14 13 27 27 H 1.09003 * 110.59646 * 80.79073 * 15 14 13 28 28 H 1.08996 * 110.03004 * 238.56895 * 16 12 11 29 29 H 1.08999 * 110.03127 * 359.95127 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3851 2.1072 -1.3947 5 1 1.4969 2.6200 0.8028 6 1 3.5892 1.4121 0.5921 7 6 2.0093 -1.2129 0.0005 8 1 3.0841 -1.2157 0.1055 9 6 1.3160 -2.4213 -0.1351 10 16 -0.4345 -2.6219 -0.1567 11 6 -0.2528 -4.3102 -0.3476 12 6 -1.3964 -5.2854 -0.4577 13 6 -1.2852 -6.3570 0.6465 14 6 -1.7609 -7.6612 -0.0405 15 6 -1.1744 -7.5291 -1.4679 16 6 -1.3259 -6.0308 -1.8021 17 7 0.9990 -4.6392 -0.3850 18 6 1.8817 -3.6806 -0.2762 19 17 3.5954 -3.9562 -0.3069 20 1 -0.4850 0.8400 -0.0004 21 1 -2.3464 -4.7578 -0.3727 22 1 -0.2520 -6.4561 0.9793 23 1 -1.9352 -6.1089 1.4856 24 1 -2.8495 -7.7059 -0.0727 25 1 -1.3522 -8.5357 0.4658 26 1 -1.7433 -8.1364 -2.1718 27 1 -0.1234 -7.8180 -1.4789 28 1 -2.2420 -5.8654 -2.3691 29 1 -0.4651 -5.6864 -2.3752 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222089221.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:28 Heat of formation + Delta-G solvation = -28.167437 kcal Electronic energy + Delta-G solvation = -14641.174822 eV Core-core repulsion = 12100.127125 eV Total energy + Delta-G solvation = -2541.047697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92108 -38.29415 -36.68786 -36.10213 -31.85377 -30.10484 -29.47038 -26.45969 -24.59199 -21.76159 -21.34601 -20.40771 -19.07101 -17.90329 -17.21068 -16.40604 -15.81683 -15.44101 -15.02719 -14.60600 -14.13292 -14.06906 -13.71558 -13.25121 -13.08939 -12.58411 -12.21003 -12.06984 -11.89943 -11.85170 -11.83512 -11.73849 -11.50466 -11.44363 -11.29419 -11.28037 -9.83800 -9.76248 -9.05627 -8.91562 -6.57719 0.57157 1.10504 1.35673 1.49356 1.53541 1.73136 2.09930 2.24745 2.28822 2.96551 3.80458 3.90855 3.97258 4.48270 4.60003 4.66343 4.77502 4.82685 4.87779 4.91445 5.01250 5.11109 5.15868 5.25532 5.43602 5.55361 5.60998 5.68567 5.90220 6.17038 6.38340 7.63086 7.91872 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.029011 B = 0.007057 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.917253 B = 3966.929473 C = 4695.363322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.016 3.984 3 Si 1.009 2.991 4 H -0.258 1.258 5 H -0.255 1.255 6 H -0.255 1.255 7 C -0.377 4.377 8 H 0.103 0.897 9 C -0.023 4.023 10 S 0.132 5.868 11 C -0.144 4.144 12 C 0.011 3.989 13 C -0.109 4.109 14 C -0.112 4.112 15 C -0.115 4.115 16 C -0.107 4.107 17 N -0.439 5.439 18 C -0.123 4.123 19 Cl -0.068 7.068 20 H 0.313 0.687 21 H 0.081 0.919 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 -2.388 -0.455 5.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.205 4.205 3 Si 0.827 3.173 4 H -0.182 1.182 5 H -0.179 1.179 6 H -0.178 1.178 7 C -0.413 4.413 8 H 0.121 0.879 9 C -0.147 4.147 10 S 0.383 5.617 11 C -0.417 4.417 12 C -0.011 4.011 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.153 4.153 16 C -0.146 4.146 17 N -0.152 5.152 18 C -0.281 4.281 19 Cl -0.041 7.041 20 H 0.126 0.874 21 H 0.099 0.901 22 H 0.060 0.940 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.233 -2.295 -0.452 5.732 hybrid contribution 1.840 0.471 -0.044 1.900 sum -3.393 -1.823 -0.496 3.883 Atomic orbital electron populations 1.69023 1.08923 1.32890 1.30172 1.27214 0.95997 1.05635 0.91664 0.84725 0.78874 0.73707 0.79979 1.18201 1.17927 1.17828 1.19575 0.96609 0.89203 1.35953 0.87898 1.23155 0.95919 0.96249 0.99388 1.83884 1.03625 1.00456 1.73703 1.26276 0.93838 0.99559 1.21990 1.20062 0.92136 0.92786 0.96104 1.22367 1.00339 0.94910 0.97225 1.22454 1.01143 0.96375 0.94922 1.22276 1.00280 0.95134 0.97596 1.22129 1.00794 0.95710 0.96005 1.64441 1.01312 1.37262 1.12234 1.20093 0.85431 0.88664 1.33871 1.98150 1.10603 1.96898 1.98449 0.87371 0.90091 0.94030 0.91255 0.89483 0.90977 0.89758 0.93627 0.90429 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.58 10.80 21.86 0.24 -35.35 15 2 C 0.02 0.70 5.49 85.27 0.47 1.17 15 3 Si 1.01 33.49 29.57 68.60 2.03 35.51 15 4 H -0.26 -8.31 7.11 99.48 0.71 -7.60 15 5 H -0.26 -7.83 7.11 99.48 0.71 -7.12 15 6 H -0.25 -8.40 7.11 99.48 0.71 -7.69 15 7 C -0.38 -18.92 9.05 23.13 0.21 -18.71 15 8 H 0.10 5.03 7.50 -2.91 -0.02 5.00 15 9 C -0.02 -1.22 6.25 22.82 0.14 -1.07 15 10 S 0.13 6.44 20.25 -56.49 -1.14 5.29 15 11 C -0.14 -6.81 5.64 88.45 0.50 -6.31 15 12 C 0.01 0.41 3.39 -10.81 -0.04 0.37 15 13 C -0.11 -3.66 6.35 31.67 0.20 -3.45 15 14 C -0.11 -2.87 6.91 31.89 0.22 -2.65 15 15 C -0.12 -3.25 6.83 31.67 0.22 -3.03 15 16 C -0.11 -3.60 6.44 31.32 0.20 -3.40 15 17 N -0.44 -22.86 10.12 -179.11 -1.81 -24.67 15 18 C -0.12 -6.58 7.49 84.98 0.64 -5.95 15 19 Cl -0.07 -3.25 28.62 -2.72 -0.08 -3.33 15 20 H 0.31 12.40 8.30 -92.71 -0.77 11.63 15 21 H 0.08 2.77 8.13 -2.39 -0.02 2.75 15 22 H 0.04 1.65 7.60 -2.39 -0.02 1.63 15 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.09 1.83 8.14 -2.39 -0.02 1.81 15 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 29 H 0.03 1.35 7.63 -2.39 -0.02 1.33 15 Total: -1.00 -57.77 272.50 3.15 -54.62 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.16 Total: 10.95 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 2.76 Total: -43.03 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -1.58 Total: -60.02 kcal Atomic # 14 Polarization: 33.49 SS G_CDS: 2.03 Total: 35.51 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -1.14 Total: 5.29 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.08 Total: -3.33 kcal Total: -57.77 3.15 -54.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222089221.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.454 kcal (2) G-P(sol) polarization free energy of solvation -57.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds