Wall clock time and date at job start Mon Mar 30 2020 06:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33633 * 122.75230 * 2 1 4 4 S 1.76204 * 107.92689 * 179.76155 * 3 2 1 5 5 C 1.70972 * 90.27901 * 0.28506 * 4 3 2 6 6 C 1.50706 * 124.91391 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47223 * 44.69173 * 6 5 4 8 8 Si 1.63101 * 113.99956 * 150.00353 * 7 6 5 9 9 C 1.86295 * 109.47263 * 60.00059 * 8 7 6 10 10 C 1.86298 * 109.47098 * 180.02562 * 8 7 6 11 11 C 1.86303 * 109.47012 * 299.99886 * 8 7 6 12 12 C 1.50702 * 109.47013 * 284.69472 * 6 5 4 13 13 N 1.27944 * 120.00235 * 235.00373 * 12 6 5 14 14 Si 1.86803 * 120.00071 * 54.72314 * 12 6 5 15 15 H 1.48494 * 109.47228 * 180.27704 * 14 12 6 16 16 H 1.48506 * 109.47130 * 300.27892 * 14 12 6 17 17 H 1.48498 * 109.47039 * 60.27174 * 14 12 6 18 18 N 1.29021 * 110.17410 * 359.70929 * 5 4 3 19 19 H 1.09001 * 109.47115 * 270.02203 * 1 2 3 20 20 H 1.09001 * 109.47189 * 30.02037 * 1 2 3 21 21 H 1.09004 * 109.47355 * 150.02232 * 1 2 3 22 22 H 1.08003 * 126.03677 * 359.97438 * 3 2 1 23 23 H 1.09000 * 109.47197 * 164.69567 * 6 5 4 24 24 H 1.08998 * 109.47088 * 60.00032 * 9 8 7 25 25 H 1.09004 * 109.47463 * 180.02562 * 9 8 7 26 26 H 1.09002 * 109.46997 * 300.00048 * 9 8 7 27 27 H 1.08996 * 109.47250 * 59.99904 * 10 8 7 28 28 H 1.08998 * 109.47349 * 179.97438 * 10 8 7 29 29 H 1.08998 * 109.47041 * 299.99838 * 10 8 7 30 30 H 1.09002 * 109.47059 * 60.00068 * 11 8 7 31 31 H 1.09004 * 109.46974 * 179.97438 * 11 8 7 32 32 H 1.08996 * 109.47313 * 300.00082 * 11 8 7 33 33 H 0.97005 * 119.99714 * 359.71919 * 13 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9333 0.6730 0.0070 5 6 3.5039 -0.9819 0.0007 6 6 4.4835 -2.1272 0.0019 7 8 5.5168 -1.8692 0.9546 8 14 6.1558 -3.2139 1.6207 9 6 6.8951 -4.2786 0.2826 10 6 7.4825 -2.7340 2.8373 11 6 4.8190 -4.1649 2.5036 12 6 5.0898 -2.2710 -1.3703 13 7 5.0287 -3.3928 -1.9823 14 14 5.9238 -0.8091 -2.1808 15 1 6.4285 -1.2067 -3.5195 16 1 4.9461 0.2988 -2.3293 17 1 7.0596 -0.3571 -1.3377 18 7 2.2199 -1.1084 0.0004 19 1 -0.3633 0.0004 1.0277 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3634 -0.8902 -0.5135 22 1 1.8392 2.1307 -0.0004 23 1 3.9652 -3.0483 0.2684 24 1 7.6772 -3.7222 -0.2339 25 1 7.3217 -5.1775 0.7277 26 1 6.1185 -4.5594 -0.4289 27 1 7.0496 -2.1113 3.6201 28 1 7.9092 -3.6326 3.2828 29 1 8.2646 -2.1773 2.3211 30 1 4.0425 -4.4457 1.7920 31 1 5.2460 -5.0639 2.9483 32 1 4.3865 -3.5420 3.2864 33 1 4.5957 -4.1520 -1.5614 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229213204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:08 Heat of formation + Delta-G solvation = -12.618827 kcal Electronic energy + Delta-G solvation = -15688.398766 eV Core-core repulsion = 13192.699945 eV Total energy + Delta-G solvation = -2495.698821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.073 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.03127 -39.22570 -35.97399 -33.22221 -29.72416 -29.38765 -28.59961 -28.52781 -28.29695 -24.27433 -22.23390 -20.88189 -18.85607 -18.22477 -17.62084 -16.94434 -15.99291 -15.64824 -15.21105 -14.50146 -14.40865 -14.32187 -13.99339 -13.92251 -13.67079 -13.52290 -13.42417 -13.38087 -13.23520 -13.08975 -12.86568 -12.77191 -12.49251 -11.99830 -11.90849 -11.62104 -10.88147 -10.85714 -10.68214 -10.40756 -10.11858 -9.53555 -0.39656 0.29831 0.61018 0.76557 1.09396 1.19410 1.58670 1.67881 1.75871 1.78728 1.86879 1.93623 2.23130 3.04478 3.43589 3.77399 3.89951 4.20401 4.31224 4.38865 4.56124 4.59222 4.61633 4.64594 4.66831 4.66960 4.67198 4.73814 4.81404 5.00546 5.28583 5.37063 5.45705 5.47977 6.59685 6.71523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.065 3.935 3 C -0.263 4.263 4 S 0.175 5.825 5 C 0.033 3.967 6 C 0.177 3.823 7 O -0.610 6.610 8 Si 1.249 2.751 9 C -0.511 4.511 10 C -0.461 4.461 11 C -0.509 4.509 12 C -0.046 4.046 13 N -0.592 5.592 14 Si 1.010 2.990 15 H -0.231 1.231 16 H -0.221 1.221 17 H -0.225 1.225 18 N -0.459 5.459 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.181 0.819 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.242 1.961 0.941 2.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C -0.402 4.402 4 S 0.430 5.570 5 C -0.245 4.245 6 C 0.114 3.886 7 O -0.566 6.566 8 Si 1.388 2.612 9 C -0.614 4.614 10 C -0.568 4.568 11 C -0.611 4.611 12 C -0.293 4.293 13 N -0.207 5.207 14 Si 0.821 3.179 15 H -0.153 1.153 16 H -0.144 1.144 17 H -0.147 1.147 18 N -0.176 5.176 19 H 0.096 0.904 20 H 0.096 0.904 21 H 0.095 0.905 22 H 0.199 0.801 23 H 0.112 0.888 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.701 2.550 -0.369 3.088 hybrid contribution -1.794 -1.377 1.521 2.726 sum -0.093 1.173 1.152 1.646 Atomic orbital electron populations 1.20385 0.86705 1.03614 1.03202 1.20283 0.98364 0.86177 1.01955 1.27084 0.95808 1.04334 1.13022 1.84151 1.06477 1.01373 1.65026 1.26345 0.93679 0.98212 1.06239 1.20103 0.85432 0.94126 0.88957 1.85400 1.52590 1.61350 1.57302 0.77360 0.64822 0.54416 0.64633 1.27161 1.08297 1.11570 1.14361 1.26221 1.12846 1.06148 1.11613 1.26964 1.14480 1.10281 1.09424 1.32249 0.97437 1.05006 0.94641 1.69495 1.12516 1.01705 1.36935 0.84254 0.80543 0.72455 0.80624 1.15348 1.14406 1.14696 1.66005 1.03987 1.32358 1.15244 0.90450 0.90447 0.90472 0.80141 0.88760 0.90439 0.90386 0.91642 0.90548 0.90229 0.90425 0.91527 0.90413 0.90711 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.04 10.31 36.00 0.37 0.41 16 2 C 0.06 0.13 6.74 -84.22 -0.57 -0.44 16 3 C -0.26 -0.18 11.13 29.12 0.32 0.15 16 4 S 0.17 0.21 19.49 -107.50 -2.10 -1.88 16 5 C 0.03 0.08 5.92 -13.46 -0.08 0.00 16 6 C 0.18 0.20 2.35 -29.03 -0.07 0.13 16 7 O -0.61 -0.24 7.75 -35.23 -0.27 -0.51 16 8 Si 1.25 -1.76 12.68 -169.99 -2.16 -3.92 16 9 C -0.51 0.39 8.04 101.05 0.81 1.20 16 10 C -0.46 0.59 8.65 101.05 0.87 1.47 16 11 C -0.51 0.31 8.56 101.05 0.87 1.18 16 12 C -0.05 -0.06 3.96 -13.90 -0.05 -0.11 16 13 N -0.59 -0.86 12.07 56.23 0.68 -0.18 16 14 Si 1.01 0.63 26.89 -169.99 -4.57 -3.95 16 15 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 16 H -0.22 0.02 6.03 56.52 0.34 0.36 16 17 H -0.22 0.06 7.11 56.52 0.40 0.46 16 18 N -0.46 -1.63 10.53 -8.06 -0.08 -1.71 16 19 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 20 H 0.08 -0.17 8.12 -51.93 -0.42 -0.59 16 21 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 22 H 0.18 -0.37 8.06 -52.48 -0.42 -0.79 16 23 H 0.10 0.00 5.85 -51.93 -0.30 -0.30 16 24 H 0.08 -0.04 7.96 -51.93 -0.41 -0.45 16 25 H 0.08 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.06 -0.03 5.16 -51.93 -0.27 -0.30 16 27 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.08 -0.15 7.96 -51.93 -0.41 -0.57 16 29 H 0.08 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.03 7.10 -51.93 -0.37 -0.40 16 31 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 33 H 0.33 -0.01 7.57 -40.82 -0.31 -0.32 16 LS Contribution 289.20 15.07 4.36 4.36 Total: 0.00 -3.60 289.20 -6.36 -9.95 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: -4.69 Total: -6.15 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 2.48 Total: 3.99 kcal Atomic # 7 Polarization: -2.49 SS G_CDS: 0.59 Total: -1.89 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -0.27 Total: -0.51 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: -6.73 Total: -7.86 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.10 Total: -1.88 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -3.60 -6.36 -9.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229213204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.664 kcal (2) G-P(sol) polarization free energy of solvation -3.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds