Wall clock time and date at job start Mon Mar 30 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33633 * 122.75230 * 2 1 4 4 S 1.76204 * 107.92689 * 179.76155 * 3 2 1 5 5 C 1.70972 * 90.27901 * 0.28506 * 4 3 2 6 6 C 1.50706 * 124.91391 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47223 * 44.69173 * 6 5 4 8 8 Si 1.63101 * 113.99956 * 150.00353 * 7 6 5 9 9 C 1.86295 * 109.47263 * 60.00059 * 8 7 6 10 10 C 1.86298 * 109.47098 * 180.02562 * 8 7 6 11 11 C 1.86303 * 109.47012 * 299.99886 * 8 7 6 12 12 C 1.50702 * 109.47013 * 284.69472 * 6 5 4 13 13 N 1.27944 * 120.00235 * 235.00373 * 12 6 5 14 14 Si 1.86803 * 120.00071 * 54.72314 * 12 6 5 15 15 H 1.48494 * 109.47228 * 180.27704 * 14 12 6 16 16 H 1.48506 * 109.47130 * 300.27892 * 14 12 6 17 17 H 1.48498 * 109.47039 * 60.27174 * 14 12 6 18 18 N 1.29021 * 110.17410 * 359.70929 * 5 4 3 19 19 H 1.09001 * 109.47115 * 270.02203 * 1 2 3 20 20 H 1.09001 * 109.47189 * 30.02037 * 1 2 3 21 21 H 1.09004 * 109.47355 * 150.02232 * 1 2 3 22 22 H 1.08003 * 126.03677 * 359.97438 * 3 2 1 23 23 H 1.09000 * 109.47197 * 164.69567 * 6 5 4 24 24 H 1.08998 * 109.47088 * 60.00032 * 9 8 7 25 25 H 1.09004 * 109.47463 * 180.02562 * 9 8 7 26 26 H 1.09002 * 109.46997 * 300.00048 * 9 8 7 27 27 H 1.08996 * 109.47250 * 59.99904 * 10 8 7 28 28 H 1.08998 * 109.47349 * 179.97438 * 10 8 7 29 29 H 1.08998 * 109.47041 * 299.99838 * 10 8 7 30 30 H 1.09002 * 109.47059 * 60.00068 * 11 8 7 31 31 H 1.09004 * 109.46974 * 179.97438 * 11 8 7 32 32 H 1.08996 * 109.47313 * 300.00082 * 11 8 7 33 33 H 0.97005 * 119.99714 * 359.71919 * 13 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9333 0.6730 0.0070 5 6 3.5039 -0.9819 0.0007 6 6 4.4835 -2.1272 0.0019 7 8 5.5168 -1.8692 0.9546 8 14 6.1558 -3.2139 1.6207 9 6 6.8951 -4.2786 0.2826 10 6 7.4825 -2.7340 2.8373 11 6 4.8190 -4.1649 2.5036 12 6 5.0898 -2.2710 -1.3703 13 7 5.0287 -3.3928 -1.9823 14 14 5.9238 -0.8091 -2.1808 15 1 6.4285 -1.2067 -3.5195 16 1 4.9461 0.2988 -2.3293 17 1 7.0596 -0.3571 -1.3377 18 7 2.2199 -1.1084 0.0004 19 1 -0.3633 0.0004 1.0277 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3634 -0.8902 -0.5135 22 1 1.8392 2.1307 -0.0004 23 1 3.9652 -3.0483 0.2684 24 1 7.6772 -3.7222 -0.2339 25 1 7.3217 -5.1775 0.7277 26 1 6.1185 -4.5594 -0.4289 27 1 7.0496 -2.1113 3.6201 28 1 7.9092 -3.6326 3.2828 29 1 8.2646 -2.1773 2.3211 30 1 4.0425 -4.4457 1.7920 31 1 5.2460 -5.0639 2.9483 32 1 4.3865 -3.5420 3.2864 33 1 4.5957 -4.1520 -1.5614 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229213204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:07 Heat of formation + Delta-G solvation = -4.419243 kcal Electronic energy + Delta-G solvation = -15688.043205 eV Core-core repulsion = 13192.699945 eV Total energy + Delta-G solvation = -2495.343260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.10537 -39.25923 -36.02183 -33.25380 -29.65732 -29.38674 -28.55418 -28.46004 -28.29036 -24.33996 -22.29328 -20.94645 -18.91349 -18.24222 -17.66288 -16.99896 -16.02228 -15.71051 -15.20702 -14.47789 -14.38306 -14.27891 -13.99253 -13.90293 -13.65457 -13.45809 -13.37037 -13.27388 -13.16008 -13.07086 -12.87673 -12.76577 -12.54171 -11.97496 -11.95831 -11.64827 -10.87779 -10.80894 -10.75904 -10.44502 -10.18153 -9.59539 -0.46742 0.24615 0.56003 0.69591 1.05024 1.22840 1.54116 1.69956 1.72251 1.79883 1.87912 1.96459 2.28834 3.02691 3.38959 3.74631 3.86754 4.23929 4.34263 4.37410 4.60497 4.63848 4.66595 4.71524 4.74433 4.75207 4.78044 4.80298 4.85070 5.01384 5.31424 5.42672 5.51762 5.58782 6.56343 6.63916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.042 3.958 3 C -0.257 4.257 4 S 0.181 5.819 5 C 0.017 3.983 6 C 0.175 3.825 7 O -0.617 6.617 8 Si 1.279 2.721 9 C -0.519 4.519 10 C -0.466 4.466 11 C -0.518 4.518 12 C -0.046 4.046 13 N -0.606 5.606 14 Si 1.004 2.996 15 H -0.243 1.243 16 H -0.212 1.212 17 H -0.210 1.210 18 N -0.485 5.485 19 H 0.082 0.918 20 H 0.096 0.904 21 H 0.069 0.931 22 H 0.208 0.792 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 2.621 1.224 2.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.396 4.396 4 S 0.436 5.564 5 C -0.260 4.260 6 C 0.112 3.888 7 O -0.573 6.573 8 Si 1.416 2.584 9 C -0.621 4.621 10 C -0.574 4.574 11 C -0.619 4.619 12 C -0.293 4.293 13 N -0.221 5.221 14 Si 0.814 3.186 15 H -0.166 1.166 16 H -0.134 1.134 17 H -0.132 1.132 18 N -0.202 5.202 19 H 0.101 0.899 20 H 0.114 0.886 21 H 0.088 0.912 22 H 0.225 0.775 23 H 0.117 0.883 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.764 3.202 -0.078 3.657 hybrid contribution -1.826 -1.582 1.432 2.809 sum -0.062 1.620 1.354 2.112 Atomic orbital electron populations 1.20446 0.85362 1.04185 1.03703 1.20701 0.99473 0.86265 1.02601 1.27425 0.95296 1.05258 1.11635 1.84053 1.07044 1.00608 1.64719 1.26553 0.93719 0.99130 1.06615 1.20118 0.85496 0.94106 0.89086 1.85391 1.52438 1.62229 1.57207 0.76863 0.64079 0.53508 0.63906 1.27247 1.08221 1.12037 1.14559 1.26266 1.12910 1.06563 1.11627 1.27078 1.14803 1.10679 1.09349 1.32371 0.97157 1.05062 0.94694 1.69489 1.13119 1.02148 1.37326 0.84389 0.81271 0.72686 0.80226 1.16557 1.13433 1.13188 1.66026 1.04640 1.33538 1.16015 0.89942 0.88554 0.91220 0.77546 0.88290 0.90659 0.89805 0.92067 0.90646 0.89447 0.90255 0.91911 0.89856 0.91307 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.09 10.31 71.23 0.73 0.82 16 2 C 0.04 0.17 6.74 41.52 0.28 0.45 16 3 C -0.26 -0.17 11.13 66.77 0.74 0.57 16 4 S 0.18 0.40 19.49 -56.49 -1.10 -0.70 16 5 C 0.02 0.09 5.92 88.52 0.52 0.62 16 6 C 0.18 0.51 2.35 29.10 0.07 0.58 16 7 O -0.62 -0.67 7.75 -148.98 -1.15 -1.82 16 8 Si 1.28 -3.36 12.68 68.60 0.87 -2.49 16 9 C -0.52 0.67 8.04 113.37 0.91 1.58 16 10 C -0.47 1.34 8.65 113.37 0.98 2.32 16 11 C -0.52 0.38 8.56 113.37 0.97 1.35 16 12 C -0.05 -0.14 3.96 88.68 0.35 0.21 16 13 N -0.61 -2.27 12.07 24.11 0.29 -1.98 16 14 Si 1.00 1.54 26.89 68.60 1.84 3.38 16 15 H -0.24 -0.79 7.11 99.48 0.71 -0.09 16 16 H -0.21 0.03 6.03 99.48 0.60 0.63 16 17 H -0.21 0.18 7.11 99.48 0.71 0.88 16 18 N -0.48 -3.74 10.53 -179.40 -1.89 -5.63 16 19 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 20 H 0.10 -0.52 8.12 -2.39 -0.02 -0.54 16 21 H 0.07 0.02 8.14 -2.38 -0.02 0.00 16 22 H 0.21 -1.19 8.06 -2.91 -0.02 -1.21 16 23 H 0.10 0.11 5.85 -2.39 -0.01 0.10 16 24 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 25 H 0.08 -0.22 7.96 -2.39 -0.02 -0.24 16 26 H 0.06 -0.02 5.16 -2.39 -0.01 -0.03 16 27 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H 0.09 -0.38 7.96 -2.39 -0.02 -0.40 16 29 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.06 0.00 7.10 -2.39 -0.02 -0.02 16 31 H 0.08 -0.17 7.96 -2.39 -0.02 -0.19 16 32 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 33 H 0.33 0.31 7.57 -92.70 -0.70 -0.39 16 Total: 0.00 -8.45 289.20 5.48 -2.97 By element: Atomic # 1 Polarization: -3.28 SS G_CDS: 1.05 Total: -2.22 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.56 Total: 8.49 kcal Atomic # 7 Polarization: -6.02 SS G_CDS: -1.60 Total: -7.61 kcal Atomic # 8 Polarization: -0.67 SS G_CDS: -1.15 Total: -1.82 kcal Atomic # 14 Polarization: -1.82 SS G_CDS: 2.72 Total: 0.89 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.10 Total: -0.70 kcal Total: -8.45 5.48 -2.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229213204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.448 kcal (2) G-P(sol) polarization free energy of solvation -8.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds