Wall clock time and date at job start Mon Mar 30 2020 07:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47252 * 240.00102 * 3 2 1 5 5 H 1.48508 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47388 * 119.99757 * 3 2 1 7 7 C 1.37877 * 120.00585 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00576 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99463 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47190 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47414 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47341 * 180.02562 * 11 10 9 13 13 C 1.39662 * 120.00149 * 180.02562 * 12 11 10 14 14 C 1.38900 * 120.05678 * 359.97438 * 13 12 11 15 15 C 1.38308 * 119.92677 * 180.02562 * 14 13 12 16 16 F 1.35104 * 119.98095 * 180.02562 * 15 14 13 17 17 C 1.38512 * 120.04332 * 0.02562 * 15 14 13 18 18 C 1.38349 * 120.10589 * 0.02562 * 17 15 14 19 19 Cl 1.73598 * 119.96413 * 180.02562 * 18 17 15 20 20 C 1.38255 * 120.07500 * 359.97438 * 18 17 15 21 21 H 0.97001 * 120.00522 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47493 * 60.00032 * 9 7 2 23 23 H 1.09000 * 109.47449 * 299.99676 * 9 7 2 24 24 H 1.09006 * 109.46697 * 59.99764 * 10 9 7 25 25 H 1.09005 * 109.47223 * 300.00518 * 10 9 7 26 26 H 1.09006 * 109.47234 * 60.00273 * 11 10 9 27 27 H 1.09000 * 109.47484 * 300.00055 * 11 10 9 28 28 H 0.97006 * 119.99870 * 0.02562 * 12 11 10 29 29 H 1.07998 * 120.03386 * 0.04700 * 14 13 12 30 30 H 1.07998 * 119.95135 * 180.02562 * 17 15 14 31 31 H 1.07997 * 120.02512 * 179.75030 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4325 -6.1005 0.0018 13 6 1.9670 -7.4173 0.0019 14 6 0.6016 -7.6725 0.0020 15 6 0.1436 -8.9776 0.0026 16 9 -1.1842 -9.2271 0.0022 17 6 1.0453 -10.0290 0.0037 18 6 2.4056 -9.7766 0.0048 19 17 3.5325 -11.0971 0.0055 20 6 2.8685 -8.4738 0.0041 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8720 -3.6042 0.8906 25 1 2.8721 -3.6043 -0.8894 26 1 0.8535 -5.0451 -0.8886 27 1 0.8541 -5.0446 0.8914 28 1 3.3862 -5.9233 0.0021 29 1 -0.1015 -6.8528 0.0012 30 1 0.6860 -11.0474 0.0038 31 1 3.9305 -8.2777 0.0090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230007379.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:27 Heat of formation + Delta-G solvation = -47.563592 kcal Electronic energy + Delta-G solvation = -15693.641255 eV Core-core repulsion = 12721.372395 eV Total energy + Delta-G solvation = -2972.268859 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.99563 -39.51525 -36.98922 -35.87017 -33.64758 -31.70358 -30.53074 -29.12963 -26.39066 -23.70049 -22.73219 -21.71459 -20.44956 -18.08521 -16.90057 -16.37385 -16.21744 -15.73837 -15.34782 -14.92993 -14.85470 -14.58258 -14.30655 -13.44954 -13.30698 -12.47713 -12.40902 -12.12543 -11.86001 -11.61273 -11.46712 -11.23893 -10.93503 -10.79297 -10.65067 -10.12488 -9.76959 -9.56074 -9.22216 -8.85512 -8.43527 -7.59826 -6.08402 -4.11813 0.94105 1.22207 1.83723 3.28159 3.33118 3.34353 3.40984 3.44247 4.18104 4.39319 4.89439 4.93267 4.98314 5.15039 5.27637 5.37897 5.58315 5.65824 5.90068 5.95352 5.99874 6.03520 6.41991 6.45718 6.61815 6.86997 7.21339 7.53956 7.65802 7.66286 7.89355 8.30606 8.94370 9.52952 11.02829 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.037799 B = 0.003325 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.579003 B = 8418.505217 C = 9133.335723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.730 5.730 13 C 0.265 3.735 14 C -0.234 4.234 15 C 0.162 3.838 16 F -0.134 7.134 17 C -0.219 4.219 18 C 0.042 3.958 19 Cl -0.066 7.066 20 C -0.207 4.207 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.404 0.596 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.155 -19.463 0.010 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.355 5.355 13 C 0.156 3.844 14 C -0.258 4.258 15 C 0.142 3.858 16 F -0.112 7.112 17 C -0.241 4.241 18 C 0.015 3.985 19 Cl -0.037 7.037 20 C -0.230 4.230 21 H 0.072 0.928 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.239 0.761 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.899 -19.262 0.011 19.653 hybrid contribution 0.624 0.880 0.000 1.079 sum 4.523 -18.382 0.010 18.930 Atomic orbital electron populations 1.69940 1.06077 1.26919 1.50359 1.25019 0.94865 0.99339 0.95140 0.86633 0.79581 0.83000 0.78649 1.20204 1.21217 1.20198 1.21155 0.92990 0.90930 1.51270 0.92681 1.19024 0.93794 0.90879 0.97578 1.21867 0.99845 0.93058 1.01096 1.21767 0.92191 0.85668 1.01178 1.45130 1.09618 1.01845 1.78949 1.17344 0.91425 0.85280 0.90377 1.20688 0.95214 0.96150 1.13748 1.17062 0.77163 0.92806 0.98769 1.91516 1.31138 1.95035 1.93542 1.20560 0.91038 0.99462 1.13061 1.20133 0.89629 0.88351 1.00409 1.98371 1.61258 1.47335 1.96736 1.20428 1.00020 0.89722 1.12876 0.92798 0.96302 0.96293 0.92608 0.92598 0.92014 0.92021 0.76107 0.83960 0.84367 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.11 1.74 4.91 -4.04 -0.02 1.72 16 12 N -0.73 -9.32 5.73 -58.65 -0.34 -9.66 16 13 C 0.26 3.31 6.65 -83.80 -0.56 2.76 16 14 C -0.23 -3.03 9.29 -39.31 -0.37 -3.40 16 15 C 0.16 2.03 7.30 -39.45 -0.29 1.74 16 16 F -0.13 -1.73 17.27 2.25 0.04 -1.69 16 17 C -0.22 -2.48 9.80 -39.44 -0.39 -2.87 16 18 C 0.04 0.47 6.32 -39.53 -0.25 0.22 16 19 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 20 C -0.21 -2.32 9.68 -39.33 -0.38 -2.70 16 21 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 27 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 28 H 0.40 4.52 8.49 -40.82 -0.35 4.17 16 29 H 0.14 1.84 6.73 -52.49 -0.35 1.49 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -28.32 290.69 -8.24 -36.57 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.60 Total: -0.54 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.94 Total: -17.52 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.40 Total: -35.14 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.32 -8.24 -36.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230007379.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.998 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds