Wall clock time and date at job start Mon Mar 30 2020 07:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47252 * 240.00102 * 3 2 1 5 5 H 1.48508 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47388 * 119.99757 * 3 2 1 7 7 C 1.37877 * 120.00585 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00576 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99463 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47190 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47414 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47341 * 180.02562 * 11 10 9 13 13 C 1.39662 * 120.00149 * 180.02562 * 12 11 10 14 14 C 1.38900 * 120.05678 * 359.97438 * 13 12 11 15 15 C 1.38308 * 119.92677 * 180.02562 * 14 13 12 16 16 F 1.35104 * 119.98095 * 180.02562 * 15 14 13 17 17 C 1.38512 * 120.04332 * 0.02562 * 15 14 13 18 18 C 1.38349 * 120.10589 * 0.02562 * 17 15 14 19 19 Cl 1.73598 * 119.96413 * 180.02562 * 18 17 15 20 20 C 1.38255 * 120.07500 * 359.97438 * 18 17 15 21 21 H 0.97001 * 120.00522 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47493 * 60.00032 * 9 7 2 23 23 H 1.09000 * 109.47449 * 299.99676 * 9 7 2 24 24 H 1.09006 * 109.46697 * 59.99764 * 10 9 7 25 25 H 1.09005 * 109.47223 * 300.00518 * 10 9 7 26 26 H 1.09006 * 109.47234 * 60.00273 * 11 10 9 27 27 H 1.09000 * 109.47484 * 300.00055 * 11 10 9 28 28 H 0.97006 * 119.99870 * 0.02562 * 12 11 10 29 29 H 1.07998 * 120.03386 * 0.04700 * 14 13 12 30 30 H 1.07998 * 119.95135 * 180.02562 * 17 15 14 31 31 H 1.07997 * 120.02512 * 179.75030 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4325 -6.1005 0.0018 13 6 1.9670 -7.4173 0.0019 14 6 0.6016 -7.6725 0.0020 15 6 0.1436 -8.9776 0.0026 16 9 -1.1842 -9.2271 0.0022 17 6 1.0453 -10.0290 0.0037 18 6 2.4056 -9.7766 0.0048 19 17 3.5325 -11.0971 0.0055 20 6 2.8685 -8.4738 0.0041 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8720 -3.6042 0.8906 25 1 2.8721 -3.6043 -0.8894 26 1 0.8535 -5.0451 -0.8886 27 1 0.8541 -5.0446 0.8914 28 1 3.3862 -5.9233 0.0021 29 1 -0.1015 -6.8528 0.0012 30 1 0.6860 -11.0474 0.0038 31 1 3.9305 -8.2777 0.0090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230007379.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:27 Heat of formation + Delta-G solvation = -62.506046 kcal Electronic energy + Delta-G solvation = -15694.289208 eV Core-core repulsion = 12721.372395 eV Total energy + Delta-G solvation = -2972.916813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.98133 -40.47577 -37.93497 -37.01711 -35.39680 -33.36632 -31.47210 -30.39667 -27.98268 -25.19782 -23.84212 -22.84968 -21.99193 -19.09556 -18.56131 -17.67370 -17.23475 -16.74118 -16.59365 -16.28389 -16.27457 -15.87499 -15.39444 -14.51255 -14.44512 -14.12617 -13.79715 -13.71138 -13.01439 -12.86022 -12.71266 -12.49738 -12.44147 -12.32332 -12.05153 -11.67193 -11.46339 -11.20913 -10.90842 -10.55154 -9.77791 -8.59157 -8.20640 -6.31611 0.00564 0.28535 0.97322 1.41390 1.43554 1.51482 2.33179 2.43768 2.50205 3.13395 3.22623 3.97962 4.03549 4.07502 4.11557 4.18498 4.22419 4.56896 4.65800 4.93401 4.95285 5.00654 5.09588 5.12258 5.16818 5.49452 5.58075 5.71444 5.83902 6.11969 6.24750 6.71987 6.85764 7.38043 8.90936 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.037799 B = 0.003325 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.579003 B = 8418.505217 C = 9133.335723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.104 4.104 11 C 0.131 3.869 12 N -0.727 5.727 13 C 0.255 3.745 14 C -0.247 4.247 15 C 0.151 3.849 16 F -0.140 7.140 17 C -0.213 4.213 18 C 0.038 3.962 19 Cl -0.051 7.051 20 C -0.198 4.198 21 H 0.264 0.736 22 H -0.005 1.005 23 H -0.005 1.005 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.413 0.587 29 H 0.135 0.865 30 H 0.154 0.846 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.937 -20.242 0.012 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.142 4.142 11 C 0.006 3.994 12 N -0.354 5.354 13 C 0.148 3.852 14 C -0.271 4.271 15 C 0.131 3.869 16 F -0.118 7.118 17 C -0.235 4.235 18 C 0.011 3.989 19 Cl -0.022 7.022 20 C -0.221 4.221 21 H 0.072 0.928 22 H 0.014 0.986 23 H 0.014 0.986 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.250 0.750 29 H 0.153 0.847 30 H 0.172 0.828 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.704 -20.073 0.012 20.868 hybrid contribution 0.066 1.018 -0.001 1.021 sum 5.770 -19.054 0.012 19.909 Atomic orbital electron populations 1.70078 1.07794 1.27870 1.51578 1.25963 0.95733 1.03358 0.94772 0.85527 0.78277 0.78214 0.79203 1.19157 1.21086 1.19146 1.21670 0.93667 0.92296 1.50639 0.91912 1.18928 0.94380 0.92678 0.95264 1.21571 0.98552 0.92401 1.01704 1.21367 0.92009 0.85112 1.00869 1.44823 1.09573 1.01317 1.79693 1.17382 0.91441 0.85296 0.91099 1.20754 0.95593 0.96339 1.14386 1.17167 0.77174 0.93031 0.99567 1.91500 1.31578 1.95049 1.93683 1.20753 0.91045 0.99905 1.11755 1.20215 0.89852 0.88834 1.00045 1.98381 1.60635 1.46539 1.96624 1.20611 1.00779 0.89324 1.11431 0.92770 0.98646 0.98638 0.91926 0.91917 0.92471 0.92478 0.74992 0.84706 0.82788 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.78 5.27 30.59 0.16 -3.62 16 11 C 0.13 3.92 4.91 86.38 0.42 4.34 16 12 N -0.73 -17.53 5.73 -339.46 -1.95 -19.47 16 13 C 0.26 6.04 6.65 38.21 0.25 6.30 16 14 C -0.25 -6.27 9.29 22.45 0.21 -6.07 16 15 C 0.15 3.65 7.30 22.35 0.16 3.81 16 16 F -0.14 -3.55 17.27 44.97 0.78 -2.77 16 17 C -0.21 -4.44 9.80 22.36 0.22 -4.22 16 18 C 0.04 0.76 6.32 22.30 0.14 0.90 16 19 Cl -0.05 -0.88 28.95 -2.72 -0.08 -0.96 16 20 C -0.20 -4.00 9.68 22.43 0.22 -3.78 16 21 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 22 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 23 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 24 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 25 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.06 1.77 7.95 -2.38 -0.02 1.75 16 27 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 28 H 0.41 8.38 8.49 -92.70 -0.79 7.59 16 29 H 0.14 3.56 6.73 -2.91 -0.02 3.54 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -60.13 290.69 4.05 -56.08 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.36 Total: 7.47 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 2.63 Total: -30.05 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -1.66 Total: -74.92 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -60.13 4.05 -56.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230007379.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.426 kcal (2) G-P(sol) polarization free energy of solvation -60.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds