Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 N 1.46492 * 109.47134 * 239.99734 * 2 1 3 5 5 C 1.36977 * 119.99917 * 281.80889 * 4 2 1 6 6 H 1.08002 * 119.99892 * 138.77916 * 5 4 2 7 7 C 1.38964 * 120.00119 * 318.76854 * 5 4 2 8 8 N 1.31419 * 119.99997 * 171.10079 * 7 5 4 9 9 Si 1.86805 * 119.99953 * 351.10950 * 7 5 4 10 10 H 1.48498 * 109.47063 * 90.97867 * 9 7 5 11 11 H 1.48495 * 109.47037 * 210.97531 * 9 7 5 12 12 H 1.48499 * 109.46981 * 330.98110 * 9 7 5 13 13 C 1.34777 * 120.00046 * 101.80990 * 4 2 1 14 14 O 1.21660 * 119.99918 * 353.83671 * 13 4 2 15 15 C 1.47128 * 119.99885 * 173.84276 * 13 4 2 16 16 C 1.47090 * 127.21492 * 352.57265 * 15 13 4 17 17 C 1.34109 * 105.98130 * 179.89298 * 16 15 13 18 18 O 1.34288 * 109.20022 * 0.37818 * 17 16 15 19 19 C 1.33700 * 110.91735 * 359.74695 * 18 17 16 20 20 Cl 1.73606 * 125.83930 * 180.02562 * 19 18 17 21 21 H 1.09005 * 109.47661 * 55.47889 * 1 2 3 22 22 H 1.09001 * 109.47644 * 175.47913 * 1 2 3 23 23 H 1.09001 * 109.47258 * 295.48089 * 1 2 3 24 24 H 1.08995 * 109.46912 * 119.99359 * 2 1 3 25 25 H 1.08995 * 109.47285 * 82.15018 * 3 2 1 26 26 H 1.08994 * 109.46528 * 202.15386 * 3 2 1 27 27 H 1.09001 * 109.46791 * 322.14839 * 3 2 1 28 28 H 0.97003 * 119.99789 * 179.97438 * 8 7 5 29 29 H 1.07997 * 127.00894 * 0.03588 * 16 15 13 30 30 H 1.08009 * 125.40282 * 180.08933 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.0177 -2.0595 -1.2447 6 1 1.7196 -2.5676 -2.1500 7 6 2.4008 -2.7946 -0.1294 8 7 2.2355 -4.0983 -0.1131 9 14 3.1505 -1.9296 1.3469 10 1 2.0749 -1.5529 2.2988 11 1 4.1102 -2.8412 2.0200 12 1 3.8624 -0.7071 0.8954 13 6 2.4681 0.0209 -2.2486 14 8 2.3654 1.2331 -2.2519 15 6 3.0833 -0.6685 -3.3936 16 6 3.4237 -2.0959 -3.4945 17 6 3.9572 -2.2630 -4.7135 18 8 3.9797 -1.0815 -5.3515 19 6 3.4638 -0.1152 -4.5849 20 17 3.3038 1.5561 -5.0266 21 1 -0.3634 0.5824 -0.8467 22 1 -0.3634 -1.0244 -0.0810 23 1 -0.3634 0.4421 0.9277 24 1 1.8932 -0.5137 0.8900 25 1 2.0288 1.8319 1.0180 26 1 3.0584 1.4677 -0.3875 27 1 1.3960 2.0555 -0.6306 28 1 2.5033 -4.6114 0.6654 29 1 3.2725 -2.8550 -2.7414 30 1 4.3165 -3.1985 -5.1164 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232652621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = -3.419482 kcal Electronic energy + Delta-G solvation = -17765.246365 eV Core-core repulsion = 14782.518948 eV Total energy + Delta-G solvation = -2982.727417 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.42360 -40.90635 -37.96778 -37.06698 -34.92847 -33.84744 -32.40310 -30.35654 -28.13291 -26.85947 -24.71226 -23.26011 -21.80434 -20.76162 -19.80566 -17.98623 -17.74606 -17.30385 -16.84556 -16.28588 -15.91374 -15.41543 -15.08893 -14.56290 -14.29290 -13.87779 -13.78243 -13.57557 -13.15235 -13.13640 -13.07780 -12.92998 -12.74387 -12.15339 -12.14144 -11.83831 -11.45259 -10.96390 -10.64292 -10.06921 -9.68444 -9.44791 -8.45277 -6.12906 0.14868 0.25294 1.18961 1.25391 1.35778 1.40363 2.17717 2.44651 2.50162 2.68466 3.01988 3.87531 4.00303 4.04446 4.20879 4.28674 4.52451 4.72278 4.73397 4.83364 4.97459 5.01732 5.03073 5.31279 5.44054 5.52951 5.58580 5.93371 6.07606 6.28542 6.97358 7.42492 7.78383 8.65101 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.009858 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.412004 B = 2839.533766 C = 3678.690456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.111 3.889 3 C -0.124 4.124 4 N -0.464 5.464 5 C -0.327 4.327 6 H 0.098 0.902 7 C 0.033 3.967 8 N -0.897 5.897 9 Si 0.928 3.072 10 H -0.260 1.260 11 H -0.291 1.291 12 H -0.271 1.271 13 C 0.536 3.464 14 O -0.586 6.586 15 C -0.198 4.198 16 C -0.182 4.182 17 C -0.023 4.023 18 O -0.173 6.173 19 C 0.060 3.940 20 Cl 0.048 6.952 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.279 0.721 29 H 0.176 0.824 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 4.176 -4.662 6.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 C -0.181 4.181 4 N -0.185 5.185 5 C -0.455 4.455 6 H 0.115 0.885 7 C -0.171 4.171 8 N -0.534 5.534 9 Si 0.757 3.243 10 H -0.187 1.187 11 H -0.219 1.219 12 H -0.197 1.197 13 C 0.328 3.672 14 O -0.472 6.472 15 C -0.204 4.204 16 C -0.201 4.201 17 C -0.088 4.088 18 O -0.071 6.071 19 C -0.019 4.019 20 Cl 0.077 6.923 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.194 0.806 30 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 2.175 4.777 -4.844 7.143 hybrid contribution 0.208 -0.010 0.935 0.958 sum 2.384 4.767 -3.909 6.610 Atomic orbital electron populations 1.22008 0.93918 1.01938 1.02405 1.21522 0.95962 0.93988 0.87659 1.22018 1.01728 0.94033 1.00361 1.43749 1.54777 1.06191 1.13815 1.19187 1.44799 0.79279 1.02215 0.88463 1.25764 0.95674 0.95526 1.00145 1.69696 1.45576 1.06430 1.31715 0.86094 0.79102 0.78301 0.80760 1.18671 1.21871 1.19685 1.17504 0.80067 0.85923 0.83741 1.90685 1.61424 1.13521 1.81577 1.21344 1.08535 0.95598 0.94881 1.23821 1.02069 0.95024 0.99196 1.24833 1.04261 0.87162 0.92530 1.83654 1.64489 1.16525 1.42458 1.22509 1.03593 0.85590 0.90209 1.98414 1.95740 1.04804 1.93319 0.92696 0.93064 0.89939 0.93126 0.92318 0.93765 0.90947 0.91066 0.80645 0.72409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 9.35 71.98 0.67 -4.77 16 2 C 0.11 4.75 2.32 44.99 0.10 4.86 16 3 C -0.12 -4.92 7.80 71.98 0.56 -4.36 16 4 N -0.46 -22.07 2.23 -617.12 -1.38 -23.45 16 5 C -0.33 -16.34 6.85 84.06 0.58 -15.76 16 6 H 0.10 5.13 5.98 -2.91 -0.02 5.11 16 7 C 0.03 1.67 5.46 84.93 0.46 2.13 16 8 N -0.90 -46.93 13.96 21.67 0.30 -46.63 16 9 Si 0.93 41.43 24.61 68.60 1.69 43.12 16 10 H -0.26 -10.95 6.86 99.48 0.68 -10.27 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.44 6.89 99.48 0.69 -11.76 16 13 C 0.54 25.34 7.15 86.58 0.62 25.96 16 14 O -0.59 -27.80 11.73 -4.22 -0.05 -27.85 16 15 C -0.20 -8.52 6.13 -18.97 -0.12 -8.63 16 16 C -0.18 -7.05 9.06 23.65 0.21 -6.83 16 17 C -0.02 -0.68 12.02 66.88 0.80 0.13 16 18 O -0.17 -5.68 10.53 3.33 0.04 -5.64 16 19 C 0.06 2.26 7.99 67.47 0.54 2.80 16 20 Cl 0.05 1.65 27.95 -2.72 -0.08 1.57 16 21 H 0.05 2.04 8.03 -2.38 -0.02 2.02 16 22 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 23 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.05 2.24 2.24 -2.39 -0.01 2.23 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.93 6.54 -2.39 -0.02 1.92 16 27 H 0.07 2.87 6.77 -2.39 -0.02 2.85 16 28 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.18 7.58 5.42 -2.91 -0.02 7.57 16 30 H 0.26 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -57.73 261.65 6.10 -51.63 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.13 Total: 11.73 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 4.44 Total: -4.48 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.07 Total: -70.08 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.01 Total: -33.49 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.69 Total: 43.12 kcal Atomic # 17 Polarization: 1.65 SS G_CDS: -0.08 Total: 1.57 kcal Total: -57.73 6.10 -51.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232652621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.215 kcal (2) G-P(sol) polarization free energy of solvation -57.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds