Wall clock time and date at job start Mon Mar 30 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99970 * 2 1 4 4 C 1.50704 * 109.47265 * 269.99744 * 3 2 1 5 5 H 1.08006 * 119.99842 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00059 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00016 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99978 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46807 * 89.99986 * 8 6 4 10 10 H 1.48502 * 109.47269 * 210.00232 * 8 6 4 11 11 H 1.48506 * 109.47235 * 330.00247 * 8 6 4 12 12 C 1.34776 * 120.00329 * 180.02562 * 2 1 3 13 13 O 1.21710 * 120.00771 * 180.02562 * 12 2 1 14 14 C 1.46552 * 119.99895 * 0.02562 * 12 2 1 15 15 C 1.36716 * 125.40302 * 171.35941 * 14 12 2 16 16 C 1.37876 * 113.24757 * 180.02562 * 15 14 12 17 17 S 1.76194 * 122.53237 * 180.02562 * 16 15 14 18 18 C 1.34261 * 114.93514 * 359.97438 * 16 15 14 19 19 S 1.70596 * 110.96881 * 0.22942 * 18 16 15 20 20 H 1.08996 * 109.47061 * 263.43818 * 1 2 3 21 21 H 1.09005 * 109.46732 * 23.44238 * 1 2 3 22 22 H 1.09000 * 109.46710 * 143.43739 * 1 2 3 23 23 H 1.08993 * 109.47126 * 29.99901 * 3 2 1 24 24 H 1.09002 * 109.46933 * 149.99961 * 3 2 1 25 25 H 0.96995 * 120.00314 * 180.02562 * 7 6 4 26 26 H 1.07995 * 123.37815 * 0.03484 * 15 14 12 27 27 H 1.34511 * 103.00130 * 270.00096 * 17 16 15 28 28 H 1.07994 * 124.51204 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1261 2.8780 -1.6728 7 7 3.3449 3.2579 -2.9126 8 14 3.7329 3.9293 -0.2529 9 1 5.1065 3.5082 0.1229 10 1 3.7477 5.3561 -0.6644 11 1 2.8270 3.7592 0.9115 12 6 2.1389 -1.1672 -0.0005 13 8 3.3560 -1.1672 -0.0001 14 6 1.4062 -2.4364 -0.0017 15 6 1.9644 -3.6730 -0.1697 16 6 1.0419 -4.6968 -0.1277 17 16 1.4951 -6.3890 -0.3163 18 6 -0.2277 -4.3069 0.0689 19 16 -0.3308 -2.6097 0.2069 20 1 -0.3633 -0.1174 1.0209 21 1 -0.3633 0.9429 -0.4089 22 1 -0.3633 -0.8254 -0.6122 23 1 1.6084 2.0283 0.5138 24 1 3.1499 1.1384 0.5139 25 1 3.8217 4.0837 -3.0899 26 1 3.0220 -3.8321 -0.3201 27 1 1.4039 -6.5804 -1.6446 28 1 -1.0718 -4.9781 0.1274 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234294085.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:01 Heat of formation + Delta-G solvation = 12.763446 kcal Electronic energy + Delta-G solvation = -14526.453849 eV Core-core repulsion = 11989.224755 eV Total energy + Delta-G solvation = -2537.229095 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.028 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.31563 -37.46388 -35.08064 -32.66493 -30.28362 -28.36405 -26.46951 -24.93330 -22.83587 -20.54593 -19.04679 -17.86495 -17.26360 -17.02719 -15.94799 -15.65592 -15.07602 -14.88137 -14.13238 -13.33744 -13.13828 -13.06379 -12.90336 -12.56095 -12.42264 -12.21860 -11.65146 -11.23257 -11.08622 -10.61681 -10.38966 -10.21993 -9.64260 -9.37392 -8.89143 -8.64702 -8.62153 -8.27227 -7.85979 -6.14143 -4.14224 0.47147 1.16217 1.50886 1.88019 2.26144 2.92272 3.25629 3.31370 3.33740 3.54584 3.73653 4.34635 4.76265 4.98894 5.19028 5.24440 5.29717 5.54432 5.69934 5.90556 5.96307 6.15462 6.58422 6.84162 7.13675 7.52195 8.00597 8.38618 8.73414 8.88895 9.44867 10.99083 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.040288 B = 0.005166 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.830818 B = 5418.352974 C = 5716.772691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.590 5.590 3 C 0.217 3.783 4 C -0.534 4.534 5 H 0.075 0.925 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.877 3.123 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.578 3.422 13 O -0.522 6.522 14 C -0.250 4.250 15 C -0.039 4.039 16 C -0.130 4.130 17 S -0.110 6.110 18 C -0.225 4.225 19 S 0.263 5.737 20 H 0.059 0.941 21 H 0.098 0.902 22 H 0.063 0.937 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.266 0.734 26 H 0.160 0.840 27 H 0.071 0.929 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.653 -13.216 7.390 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.321 5.321 3 C 0.097 3.903 4 C -0.572 4.572 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.364 3.636 13 O -0.400 6.400 14 C -0.372 4.372 15 C -0.072 4.072 16 C -0.256 4.256 17 S 0.045 5.955 18 C -0.365 4.365 19 S 0.531 5.469 20 H 0.077 0.923 21 H 0.117 0.883 22 H 0.080 0.920 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.177 0.823 27 H 0.035 0.965 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.862 -12.943 7.639 18.544 hybrid contribution 1.016 0.343 -0.752 1.310 sum -9.846 -12.599 6.887 17.410 Atomic orbital electron populations 1.21885 0.81467 1.03283 1.00983 1.47723 1.05943 1.07134 1.71322 1.19764 0.92583 0.79260 0.98698 1.21306 1.37497 1.07328 0.91095 0.90690 1.24852 0.95100 0.97300 0.95653 1.69887 1.41185 1.23556 1.18706 0.86846 0.80244 0.79779 0.82808 1.19780 1.20979 1.18980 1.16858 0.86894 0.81874 0.78015 1.90822 1.12513 1.86434 1.50280 1.24969 0.97257 0.98545 1.16409 1.20934 1.01278 0.89131 0.95892 1.19825 0.94620 0.96802 1.14348 1.85829 1.91393 1.07101 1.11188 1.26451 1.00727 1.04943 1.04425 1.83736 1.03618 0.95388 1.64198 0.92305 0.88333 0.91955 0.94711 0.94102 0.92443 0.82263 0.96455 0.81120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 8.91 59.85 0.53 1.56 15 2 N -0.59 -12.02 2.86 -184.56 -0.53 -12.55 15 3 C 0.22 5.18 4.20 -5.19 -0.02 5.16 15 4 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 15 5 H 0.07 2.34 8.06 -52.48 -0.42 1.91 15 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 15 7 N -0.90 -27.30 13.96 55.43 0.77 -26.53 15 8 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 15 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.27 -5.95 6.54 56.52 0.37 -5.58 15 12 C 0.58 12.13 7.64 -12.91 -0.10 12.03 15 13 O -0.52 -13.09 16.43 5.18 0.09 -13.00 15 14 C -0.25 -4.09 6.23 -36.78 -0.23 -4.32 15 15 C -0.04 -0.60 9.86 -40.26 -0.40 -1.00 15 16 C -0.13 -1.70 6.01 -41.12 -0.25 -1.94 15 17 S -0.11 -1.27 25.94 -107.50 -2.79 -4.06 15 18 C -0.23 -2.47 10.73 29.33 0.31 -2.15 15 19 S 0.26 2.99 17.87 -107.50 -1.92 1.07 15 20 H 0.06 0.68 7.76 -51.93 -0.40 0.28 15 21 H 0.10 1.42 8.02 -51.93 -0.42 1.01 15 22 H 0.06 0.82 4.61 -23.14 -0.11 0.71 15 23 H 0.04 0.77 7.13 -51.93 -0.37 0.40 15 24 H 0.04 1.04 6.85 -51.93 -0.36 0.68 15 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 26 H 0.16 2.51 8.06 -52.49 -0.42 2.08 15 27 H 0.07 0.77 9.07 97.61 0.89 1.66 15 28 H 0.17 1.40 8.06 -52.49 -0.42 0.98 15 LS Contribution 270.20 15.07 4.07 4.07 Total: -1.00 -33.07 270.20 -6.76 -39.83 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -1.20 Total: -1.19 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.59 Total: -4.09 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.25 Total: -39.08 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -4.71 Total: -2.99 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.07 -6.76 -39.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234294085.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.592 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds