Wall clock time and date at job start Mon Mar 30 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99970 * 2 1 4 4 C 1.50704 * 109.47265 * 269.99744 * 3 2 1 5 5 H 1.08006 * 119.99842 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00059 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00016 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99978 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46807 * 89.99986 * 8 6 4 10 10 H 1.48502 * 109.47269 * 210.00232 * 8 6 4 11 11 H 1.48506 * 109.47235 * 330.00247 * 8 6 4 12 12 C 1.34776 * 120.00329 * 180.02562 * 2 1 3 13 13 O 1.21710 * 120.00771 * 180.02562 * 12 2 1 14 14 C 1.46552 * 119.99895 * 0.02562 * 12 2 1 15 15 C 1.36716 * 125.40302 * 171.35941 * 14 12 2 16 16 C 1.37876 * 113.24757 * 180.02562 * 15 14 12 17 17 S 1.76194 * 122.53237 * 180.02562 * 16 15 14 18 18 C 1.34261 * 114.93514 * 359.97438 * 16 15 14 19 19 S 1.70596 * 110.96881 * 0.22942 * 18 16 15 20 20 H 1.08996 * 109.47061 * 263.43818 * 1 2 3 21 21 H 1.09005 * 109.46732 * 23.44238 * 1 2 3 22 22 H 1.09000 * 109.46710 * 143.43739 * 1 2 3 23 23 H 1.08993 * 109.47126 * 29.99901 * 3 2 1 24 24 H 1.09002 * 109.46933 * 149.99961 * 3 2 1 25 25 H 0.96995 * 120.00314 * 180.02562 * 7 6 4 26 26 H 1.07995 * 123.37815 * 0.03484 * 15 14 12 27 27 H 1.34511 * 103.00130 * 270.00096 * 17 16 15 28 28 H 1.07994 * 124.51204 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1261 2.8780 -1.6728 7 7 3.3449 3.2579 -2.9126 8 14 3.7329 3.9293 -0.2529 9 1 5.1065 3.5082 0.1229 10 1 3.7477 5.3561 -0.6644 11 1 2.8270 3.7592 0.9115 12 6 2.1389 -1.1672 -0.0005 13 8 3.3560 -1.1672 -0.0001 14 6 1.4062 -2.4364 -0.0017 15 6 1.9644 -3.6730 -0.1697 16 6 1.0419 -4.6968 -0.1277 17 16 1.4951 -6.3890 -0.3163 18 6 -0.2277 -4.3069 0.0689 19 16 -0.3308 -2.6097 0.2069 20 1 -0.3633 -0.1174 1.0209 21 1 -0.3633 0.9429 -0.4089 22 1 -0.3633 -0.8254 -0.6122 23 1 1.6084 2.0283 0.5138 24 1 3.1499 1.1384 0.5139 25 1 3.8217 4.0837 -3.0899 26 1 3.0220 -3.8321 -0.3201 27 1 1.4039 -6.5804 -1.6446 28 1 -1.0718 -4.9781 0.1274 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234294085.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:00 Heat of formation + Delta-G solvation = -10.693385 kcal Electronic energy + Delta-G solvation = -14527.471014 eV Core-core repulsion = 11989.224755 eV Total energy + Delta-G solvation = -2538.246259 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.028 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.85206 -38.60805 -36.75073 -34.77632 -31.74691 -29.96649 -27.84256 -26.27981 -24.48264 -22.01156 -20.20620 -19.21198 -19.17305 -18.24842 -17.38940 -16.92311 -16.63802 -16.29176 -15.80641 -14.83300 -14.52798 -14.36079 -14.14773 -14.07770 -13.76945 -13.71336 -13.25890 -12.99933 -12.48241 -12.23643 -12.04508 -11.76508 -11.41704 -11.05748 -10.84446 -10.06786 -9.65801 -9.39486 -9.17245 -8.35457 -6.41894 -0.60398 0.21405 0.42768 0.83528 1.23572 1.33828 1.38634 1.46522 1.96001 2.04554 2.28028 2.30894 2.99082 3.53926 4.01027 4.07978 4.24145 4.45320 4.56882 4.72434 4.79393 4.85141 4.98687 5.02798 5.40457 5.46410 6.19231 6.46254 6.59631 7.11359 7.25538 8.81518 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.040288 B = 0.005166 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.830818 B = 5418.352974 C = 5716.772691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.599 5.599 3 C 0.224 3.776 4 C -0.541 4.541 5 H 0.027 0.973 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.231 1.231 12 C 0.569 3.431 13 O -0.585 6.585 14 C -0.302 4.302 15 C -0.039 4.039 16 C -0.155 4.155 17 S -0.102 6.102 18 C -0.201 4.201 19 S 0.351 5.649 20 H 0.099 0.901 21 H 0.101 0.899 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.023 0.977 25 H 0.269 0.731 26 H 0.140 0.860 27 H 0.077 0.923 28 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.372 -13.847 9.415 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.329 5.329 3 C 0.102 3.898 4 C -0.580 4.580 5 H 0.045 0.955 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.154 1.154 12 C 0.358 3.642 13 O -0.467 6.467 14 C -0.423 4.423 15 C -0.073 4.073 16 C -0.279 4.279 17 S 0.053 5.947 18 C -0.341 4.341 19 S 0.619 5.381 20 H 0.117 0.883 21 H 0.119 0.881 22 H 0.095 0.905 23 H 0.082 0.918 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.157 0.843 27 H 0.041 0.959 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -13.654 -13.586 9.675 21.555 hybrid contribution 1.764 0.400 -1.472 2.332 sum -11.891 -13.185 8.203 19.558 Atomic orbital electron populations 1.22255 0.77981 1.04303 1.03877 1.47787 1.08247 1.05869 1.70966 1.19474 0.93031 0.81625 0.95637 1.21540 1.37306 1.06844 0.92282 0.95455 1.25872 0.95111 0.98924 0.98742 1.70045 1.42514 1.24507 1.21434 0.85703 0.79643 0.77665 0.79876 1.20385 1.19970 1.15426 1.17508 0.86614 0.83426 0.76670 1.90761 1.15278 1.87600 1.53085 1.24592 1.01113 0.96400 1.20230 1.20974 1.01127 0.89918 0.95301 1.19805 0.94986 0.97004 1.16155 1.85795 1.91673 1.05624 1.11616 1.26942 1.00929 1.05544 1.00696 1.83197 0.98027 0.94943 1.61919 0.88251 0.88090 0.90489 0.91805 0.95917 0.92179 0.84252 0.95927 0.77337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.61 8.91 127.77 1.14 2.74 15 2 N -0.60 -24.31 2.86 -856.02 -2.45 -26.75 15 3 C 0.22 10.71 4.20 85.63 0.36 11.07 15 4 C -0.54 -31.65 9.94 25.60 0.25 -31.39 15 5 H 0.03 1.80 8.06 -2.91 -0.02 1.77 15 6 C 0.01 0.69 5.47 84.66 0.46 1.15 15 7 N -0.95 -59.56 13.96 21.45 0.30 -59.27 15 8 Si 0.95 43.62 27.47 68.60 1.88 45.51 15 9 H -0.28 -12.99 7.11 99.48 0.71 -12.29 15 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 11 H -0.23 -9.31 6.54 99.48 0.65 -8.66 15 12 C 0.57 24.54 7.64 86.41 0.66 25.20 15 13 O -0.58 -31.06 16.43 -4.38 -0.07 -31.13 15 14 C -0.30 -9.74 6.23 24.08 0.15 -9.59 15 15 C -0.04 -1.19 9.86 21.83 0.22 -0.97 15 16 C -0.16 -3.72 6.01 21.28 0.13 -3.59 15 17 S -0.10 -2.17 25.94 -56.49 -1.47 -3.63 15 18 C -0.20 -3.56 10.73 66.91 0.72 -2.85 15 19 S 0.35 6.68 17.87 -56.49 -1.01 5.67 15 20 H 0.10 1.89 7.76 -2.39 -0.02 1.87 15 21 H 0.10 2.69 8.02 -2.38 -0.02 2.67 15 22 H 0.08 1.81 4.61 -20.69 -0.10 1.71 15 23 H 0.06 2.68 7.13 -2.39 -0.02 2.66 15 24 H 0.02 1.17 6.85 -2.39 -0.02 1.15 15 25 H 0.27 15.73 8.31 -92.71 -0.77 14.96 15 26 H 0.14 4.69 8.06 -2.91 -0.02 4.67 15 27 H 0.08 1.52 9.07 73.36 0.67 2.19 15 28 H 0.21 2.17 8.06 -2.91 -0.02 2.15 15 Total: -1.00 -77.38 270.20 3.00 -74.38 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.72 Total: 3.46 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 4.09 Total: -8.24 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.15 Total: -86.02 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.07 Total: -31.13 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -2.47 Total: 2.03 kcal Total: -77.38 3.00 -74.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234294085.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.687 kcal (2) G-P(sol) polarization free energy of solvation -77.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds