Wall clock time and date at job start Mon Mar 30 2020 07:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86792 * 119.99980 * 2 1 4 4 H 1.48501 * 109.47259 * 274.99000 * 3 2 1 5 5 H 1.48500 * 109.47404 * 34.99199 * 3 2 1 6 6 H 1.48498 * 109.47170 * 154.99488 * 3 2 1 7 7 C 1.40268 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00124 * 186.16791 * 7 2 1 9 9 C 1.40359 * 119.99937 * 6.15789 * 7 2 1 10 10 N 1.33736 * 120.51023 * 353.36261 * 9 7 2 11 11 C 1.31597 * 122.38305 * 179.97438 * 10 9 7 12 12 C 1.38105 * 122.67738 * 0.02562 * 11 10 9 13 13 C 1.40570 * 119.54971 * 0.02562 * 12 11 10 14 14 C 1.40211 * 122.14358 * 179.97438 * 13 12 11 15 15 C 1.36864 * 119.83007 * 180.36426 * 14 13 12 16 16 C 1.40174 * 120.62643 * 359.29186 * 15 14 13 17 17 C 1.38406 * 120.54384 * 0.73193 * 16 15 14 18 18 C 1.39180 * 119.66201 * 359.62797 * 17 16 15 19 19 O 1.36058 * 120.61123 * 180.67120 * 16 15 14 20 20 C 1.43420 * 116.60331 * 342.04729 * 19 16 15 21 21 C 1.53451 * 108.02752 * 47.04666 * 20 19 16 22 22 O 1.36171 * 118.81530 * 179.33323 * 15 14 13 23 23 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 24 24 H 1.08001 * 118.65977 * 180.02562 * 11 10 9 25 25 H 1.07998 * 120.22663 * 180.02562 * 12 11 10 26 26 H 1.08005 * 120.08643 * 0.08276 * 14 13 12 27 27 H 1.08008 * 120.17054 * 179.65068 * 17 16 15 28 28 H 1.08998 * 110.08724 * 287.27400 * 20 19 16 29 29 H 1.08995 * 109.59517 * 166.53391 * 20 19 16 30 30 H 1.08995 * 109.70686 * 179.91111 * 21 20 19 31 31 H 1.08998 * 109.70224 * 59.29928 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3824 2.1073 -1.3948 5 1 1.4945 2.6199 0.8029 6 1 3.5866 1.4120 0.5918 7 6 2.0077 -1.2148 -0.0005 8 1 3.0829 -1.2175 0.0999 9 6 1.3120 -2.4267 -0.1315 10 7 -0.0252 -2.4463 -0.1235 11 6 -0.7145 -3.5608 -0.2441 12 6 -0.1149 -4.7966 -0.3875 13 6 1.2877 -4.8885 -0.4074 14 6 1.9530 -6.1144 -0.5497 15 6 3.3212 -6.1499 -0.5555 16 6 4.0666 -4.9689 -0.4351 17 6 3.4313 -3.7475 -0.2931 18 6 2.0407 -3.6921 -0.2777 19 8 5.4266 -5.0031 -0.4544 20 6 6.0408 -6.2745 -0.2027 21 6 5.3255 -7.3258 -1.0616 22 8 3.9460 -7.3532 -0.6811 23 1 -0.4850 0.8400 0.0004 24 1 -1.7931 -3.5068 -0.2302 25 1 -0.7194 -5.6863 -0.4838 26 1 1.3873 -7.0290 -0.6500 27 1 4.0117 -2.8419 -0.1952 28 1 5.9451 -6.5342 0.8515 29 1 7.0950 -6.2317 -0.4763 30 1 5.7730 -8.3051 -0.8922 31 1 5.4108 -7.0595 -2.1151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236241697.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:50 Heat of formation + Delta-G solvation = -28.278357 kcal Electronic energy + Delta-G solvation = -18376.615512 eV Core-core repulsion = 15395.242983 eV Total energy + Delta-G solvation = -2981.372529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56082 -38.41664 -36.68108 -35.19377 -33.84955 -31.32234 -30.49816 -28.47162 -28.12115 -25.80687 -24.05421 -22.68148 -21.03465 -20.79278 -18.27911 -17.82776 -17.15882 -16.42909 -15.68275 -15.21839 -14.63949 -14.27187 -14.12830 -13.92365 -13.91053 -13.21299 -12.83343 -12.61143 -12.27271 -11.98229 -11.83708 -11.44201 -11.24875 -11.11412 -10.77760 -10.57487 -10.29023 -10.02400 -9.65347 -9.48460 -8.57078 -7.68430 -7.40391 -6.92308 -6.71291 -4.71766 1.68053 2.15860 2.82204 2.93450 2.97543 3.26465 3.53762 3.70188 3.75788 4.21514 4.58288 4.61240 5.02843 5.09152 5.29328 5.44212 5.64010 5.76543 5.95625 6.08012 6.11597 6.18591 6.39083 6.60083 6.68711 6.83055 7.00968 7.03990 7.23829 7.31836 7.54025 7.73479 7.81063 7.97994 8.13965 8.28444 8.65616 9.85886 10.10467 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.006791 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.000363 B = 4122.373346 C = 5199.132743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.678 5.678 2 C 0.058 3.942 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.375 4.375 8 H 0.096 0.904 9 C 0.268 3.732 10 N -0.530 5.530 11 C 0.162 3.838 12 C -0.356 4.356 13 C 0.045 3.955 14 C -0.170 4.170 15 C 0.079 3.921 16 C -0.033 4.033 17 C -0.048 4.048 18 C -0.159 4.159 19 O -0.314 6.314 20 C 0.023 3.977 21 C 0.023 3.977 22 O -0.318 6.318 23 H 0.282 0.718 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.130 0.870 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -5.345 -0.727 9.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.297 5.297 2 C -0.172 4.172 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.405 4.405 8 H 0.114 0.886 9 C 0.140 3.860 10 N -0.245 5.245 11 C 0.002 3.998 12 C -0.381 4.381 13 C 0.041 3.959 14 C -0.190 4.190 15 C 0.034 3.966 16 C -0.077 4.077 17 C -0.068 4.068 18 C -0.163 4.163 19 O -0.230 6.230 20 C -0.053 4.053 21 C -0.053 4.053 22 O -0.233 6.233 23 H 0.093 0.907 24 H 0.134 0.866 25 H 0.116 0.884 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.976 -4.443 -0.631 8.295 hybrid contribution 0.911 -0.477 -0.148 1.039 sum 7.886 -4.921 -0.779 9.328 Atomic orbital electron populations 1.70096 1.07603 1.28972 1.22999 1.26287 0.95108 1.01758 0.94034 0.86144 0.80645 0.79753 0.79592 1.18946 1.19598 1.17941 1.19816 0.95486 0.89515 1.35639 0.88628 1.19727 0.88500 0.89493 0.88242 1.68678 1.06317 1.26085 1.23409 1.22239 0.98639 0.88601 0.90285 1.20971 0.92626 0.98192 1.26315 1.17500 0.93820 0.90758 0.93850 1.19877 0.90190 0.97859 1.11042 1.18573 0.92151 0.83196 1.02633 1.18673 0.81564 0.93839 1.13594 1.20274 0.93444 0.94792 0.98251 1.19725 0.92193 0.95210 1.09166 1.86294 1.17283 1.30715 1.88674 1.23443 0.97906 0.84155 0.99783 1.23469 0.81592 1.01112 0.99120 1.86259 1.24117 1.27450 1.85438 0.90680 0.86642 0.88448 0.86196 0.85227 0.91385 0.87210 0.87167 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.76 11.52 55.56 0.64 -16.12 16 2 C 0.06 1.36 5.49 -17.30 -0.10 1.27 16 3 Si 0.92 16.99 29.57 -169.99 -5.03 11.97 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 7 C -0.38 -9.35 8.83 -38.02 -0.34 -9.68 16 8 H 0.10 2.18 6.26 -52.49 -0.33 1.85 16 9 C 0.27 7.12 6.72 -82.80 -0.56 6.56 16 10 N -0.53 -14.32 7.91 -9.84 -0.08 -14.39 16 11 C 0.16 3.96 11.07 -17.70 -0.20 3.76 16 12 C -0.36 -8.37 9.90 -38.75 -0.38 -8.75 16 13 C 0.04 1.08 5.74 -106.85 -0.61 0.47 16 14 C -0.17 -3.72 9.69 -39.34 -0.38 -4.10 16 15 C 0.08 1.65 6.46 -39.35 -0.25 1.40 16 16 C -0.03 -0.70 6.50 -38.79 -0.25 -0.95 16 17 C -0.05 -1.09 9.39 -39.17 -0.37 -1.46 16 18 C -0.16 -3.97 5.90 -104.68 -0.62 -4.59 16 19 O -0.31 -5.83 10.41 -32.44 -0.34 -6.17 16 20 C 0.02 0.31 7.26 37.39 0.27 0.58 16 21 C 0.02 0.30 7.24 37.39 0.27 0.58 16 22 O -0.32 -5.74 10.39 -32.80 -0.34 -6.08 16 23 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 24 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 25 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 26 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 27 H 0.13 2.77 6.47 -52.48 -0.34 2.43 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 269.07 15.07 4.05 4.05 Total: -1.00 -29.57 269.07 -7.36 -36.93 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.76 Total: 4.72 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -3.51 Total: -14.92 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.56 Total: -30.51 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.68 Total: -12.24 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.57 -7.36 -36.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236241697.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.654 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds