Wall clock time and date at job start Mon Mar 30 2020 07:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86792 * 119.99980 * 2 1 4 4 H 1.48501 * 109.47259 * 274.99000 * 3 2 1 5 5 H 1.48500 * 109.47404 * 34.99199 * 3 2 1 6 6 H 1.48498 * 109.47170 * 154.99488 * 3 2 1 7 7 C 1.40268 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00124 * 186.16791 * 7 2 1 9 9 C 1.40359 * 119.99937 * 6.15789 * 7 2 1 10 10 N 1.33736 * 120.51023 * 353.36261 * 9 7 2 11 11 C 1.31597 * 122.38305 * 179.97438 * 10 9 7 12 12 C 1.38105 * 122.67738 * 0.02562 * 11 10 9 13 13 C 1.40570 * 119.54971 * 0.02562 * 12 11 10 14 14 C 1.40211 * 122.14358 * 179.97438 * 13 12 11 15 15 C 1.36864 * 119.83007 * 180.36426 * 14 13 12 16 16 C 1.40174 * 120.62643 * 359.29186 * 15 14 13 17 17 C 1.38406 * 120.54384 * 0.73193 * 16 15 14 18 18 C 1.39180 * 119.66201 * 359.62797 * 17 16 15 19 19 O 1.36058 * 120.61123 * 180.67120 * 16 15 14 20 20 C 1.43420 * 116.60331 * 342.04729 * 19 16 15 21 21 C 1.53451 * 108.02752 * 47.04666 * 20 19 16 22 22 O 1.36171 * 118.81530 * 179.33323 * 15 14 13 23 23 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 24 24 H 1.08001 * 118.65977 * 180.02562 * 11 10 9 25 25 H 1.07998 * 120.22663 * 180.02562 * 12 11 10 26 26 H 1.08005 * 120.08643 * 0.08276 * 14 13 12 27 27 H 1.08008 * 120.17054 * 179.65068 * 17 16 15 28 28 H 1.08998 * 110.08724 * 287.27400 * 20 19 16 29 29 H 1.08995 * 109.59517 * 166.53391 * 20 19 16 30 30 H 1.08995 * 109.70686 * 179.91111 * 21 20 19 31 31 H 1.08998 * 109.70224 * 59.29928 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3824 2.1073 -1.3948 5 1 1.4945 2.6199 0.8029 6 1 3.5866 1.4120 0.5918 7 6 2.0077 -1.2148 -0.0005 8 1 3.0829 -1.2175 0.0999 9 6 1.3120 -2.4267 -0.1315 10 7 -0.0252 -2.4463 -0.1235 11 6 -0.7145 -3.5608 -0.2441 12 6 -0.1149 -4.7966 -0.3875 13 6 1.2877 -4.8885 -0.4074 14 6 1.9530 -6.1144 -0.5497 15 6 3.3212 -6.1499 -0.5555 16 6 4.0666 -4.9689 -0.4351 17 6 3.4313 -3.7475 -0.2931 18 6 2.0407 -3.6921 -0.2777 19 8 5.4266 -5.0031 -0.4544 20 6 6.0408 -6.2745 -0.2027 21 6 5.3255 -7.3258 -1.0616 22 8 3.9460 -7.3532 -0.6811 23 1 -0.4850 0.8400 0.0004 24 1 -1.7931 -3.5068 -0.2302 25 1 -0.7194 -5.6863 -0.4838 26 1 1.3873 -7.0290 -0.6500 27 1 4.0117 -2.8419 -0.1952 28 1 5.9451 -6.5342 0.8515 29 1 7.0950 -6.2317 -0.4763 30 1 5.7730 -8.3051 -0.8922 31 1 5.4108 -7.0595 -2.1151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236241697.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:49 Heat of formation + Delta-G solvation = -46.251991 kcal Electronic energy + Delta-G solvation = -18377.394907 eV Core-core repulsion = 15395.242983 eV Total energy + Delta-G solvation = -2982.151924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.04757 -40.13509 -38.11437 -36.89290 -35.61905 -33.09590 -31.89693 -30.20233 -29.65405 -27.59798 -25.46023 -24.40273 -22.71401 -22.41754 -19.87909 -19.34182 -18.78014 -17.92830 -17.37884 -16.61170 -16.16782 -15.81311 -15.67224 -15.55267 -15.30344 -14.80715 -14.47171 -14.31105 -13.87023 -13.54821 -13.39734 -13.09609 -12.81550 -12.76583 -12.14015 -11.96538 -11.78893 -11.67421 -11.24702 -11.21220 -10.32745 -9.53100 -9.08434 -8.70783 -8.48066 -6.57351 -0.07803 0.42081 1.21896 1.40692 1.57069 1.61221 2.14103 2.16069 2.41631 2.48966 2.84995 3.41594 3.76565 3.88206 4.02007 4.14648 4.21866 4.31879 4.32628 4.51777 4.53708 4.63053 4.69020 4.91667 4.98256 5.08704 5.28464 5.30633 5.47421 5.61550 5.90206 5.98828 6.06943 6.17759 6.46404 6.59396 6.81182 8.13509 8.27328 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.006791 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.000363 B = 4122.373346 C = 5199.132743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.248 1.248 7 C -0.401 4.401 8 H 0.106 0.894 9 C 0.236 3.764 10 N -0.564 5.564 11 C 0.139 3.861 12 C -0.357 4.357 13 C 0.018 3.982 14 C -0.174 4.174 15 C 0.083 3.917 16 C -0.018 4.018 17 C -0.067 4.067 18 C -0.182 4.182 19 O -0.326 6.326 20 C 0.014 3.986 21 C 0.014 3.986 22 O -0.324 6.324 23 H 0.290 0.710 24 H 0.135 0.865 25 H 0.120 0.880 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.052 -6.340 -0.924 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.210 4.210 3 Si 0.814 3.186 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.171 1.171 7 C -0.430 4.430 8 H 0.124 0.876 9 C 0.108 3.892 10 N -0.280 5.280 11 C -0.019 4.019 12 C -0.382 4.382 13 C 0.014 3.986 14 C -0.194 4.194 15 C 0.038 3.962 16 C -0.062 4.062 17 C -0.086 4.086 18 C -0.186 4.186 19 O -0.242 6.242 20 C -0.061 4.061 21 C -0.060 4.060 22 O -0.239 6.239 23 H 0.102 0.898 24 H 0.152 0.848 25 H 0.138 0.862 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.092 0.908 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.439 -5.490 -0.829 10.951 hybrid contribution 0.337 -0.428 -0.112 0.556 sum 9.777 -5.917 -0.941 11.467 Atomic orbital electron populations 1.70168 1.09384 1.30510 1.23764 1.27278 0.95847 1.05042 0.92824 0.84979 0.79278 0.74621 0.79728 1.18483 1.18643 1.17139 1.20203 0.96189 0.90117 1.36535 0.87597 1.20196 0.88909 0.90898 0.89153 1.68634 1.06986 1.27369 1.24993 1.22598 0.99611 0.88757 0.90965 1.21225 0.92930 0.98616 1.25387 1.17808 0.94335 0.91567 0.94887 1.20053 0.91077 0.97612 1.10610 1.18591 0.92094 0.84192 1.01340 1.18710 0.83056 0.93304 1.11158 1.20329 0.92864 0.95941 0.99489 1.19896 0.93340 0.95159 1.10224 1.86277 1.15515 1.34084 1.88343 1.23947 0.99819 0.81898 1.00444 1.23960 0.78993 1.03720 0.99342 1.86253 1.26805 1.25675 1.85161 0.89840 0.84802 0.86211 0.84405 0.84817 0.90768 0.82698 0.82430 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -36.70 11.52 21.88 0.25 -36.45 16 2 C 0.02 0.78 5.49 85.36 0.47 1.25 16 3 Si 1.00 34.91 29.57 68.60 2.03 36.94 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 5 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 6 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 7 C -0.40 -20.68 8.83 23.28 0.21 -20.47 16 8 H 0.11 4.98 6.26 -2.91 -0.02 4.96 16 9 C 0.24 13.12 6.72 41.60 0.28 13.40 16 10 N -0.56 -31.88 7.91 -185.05 -1.46 -33.35 16 11 C 0.14 7.02 11.07 84.70 0.94 7.96 16 12 C -0.36 -17.09 9.90 22.81 0.23 -16.87 16 13 C 0.02 0.88 5.74 -21.31 -0.12 0.76 16 14 C -0.17 -7.50 9.69 22.43 0.22 -7.28 16 15 C 0.08 3.35 6.46 22.42 0.14 3.49 16 16 C -0.02 -0.73 6.50 22.78 0.15 -0.59 16 17 C -0.07 -3.07 9.39 22.54 0.21 -2.86 16 18 C -0.18 -9.40 5.90 -19.91 -0.12 -9.52 16 19 O -0.33 -11.30 10.41 -82.24 -0.86 -12.16 16 20 C 0.01 0.31 7.26 72.13 0.52 0.83 16 21 C 0.01 0.32 7.24 72.13 0.52 0.84 16 22 O -0.32 -10.69 10.39 -83.52 -0.87 -11.55 16 23 H 0.29 13.09 8.29 -92.71 -0.77 12.32 16 24 H 0.13 5.98 8.06 -2.91 -0.02 5.95 16 25 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 26 H 0.14 5.29 8.06 -2.91 -0.02 5.27 16 27 H 0.13 5.85 6.47 -2.91 -0.02 5.83 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.16 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.16 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -66.65 269.07 3.91 -62.75 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 1.17 Total: 22.88 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 3.65 Total: -29.06 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.21 Total: -69.79 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.72 Total: -23.71 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -66.65 3.91 -62.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236241697.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.495 kcal (2) G-P(sol) polarization free energy of solvation -66.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds