Wall clock time and date at job start Mon Mar 30 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47030 * 2 1 4 4 C 1.38268 * 119.93947 * 265.00106 * 3 2 1 5 5 C 1.38064 * 120.18268 * 180.28067 * 4 3 2 6 6 C 1.39176 * 120.05938 * 359.44729 * 5 4 3 7 7 S 1.76205 * 120.05503 * 180.30053 * 6 5 4 8 8 C 1.76194 * 100.00156 * 6.92734 * 7 6 5 9 9 H 1.07999 * 119.99856 * 5.67905 * 8 7 6 10 10 C 1.38716 * 120.00101 * 185.67338 * 8 7 6 11 11 N 1.31630 * 119.99835 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00174 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47034 * 90.00167 * 12 10 8 14 14 H 1.48490 * 109.47268 * 210.00086 * 12 10 8 15 15 H 1.48504 * 109.47262 * 330.00458 * 12 10 8 16 16 C 1.39029 * 119.88565 * 0.56945 * 6 5 4 17 17 Cl 1.73600 * 120.09475 * 179.72797 * 16 6 5 18 18 C 1.38823 * 119.81927 * 359.70763 * 16 6 5 19 19 N 1.39749 * 120.03544 * 179.97438 * 18 16 6 20 20 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46694 * 300.00054 * 1 2 3 22 22 H 1.09000 * 109.47199 * 59.99778 * 1 2 3 23 23 H 1.09001 * 109.46694 * 239.99946 * 2 1 3 24 24 H 1.09000 * 109.47199 * 120.00222 * 2 1 3 25 25 H 1.07997 * 119.90537 * 359.97438 * 4 3 2 26 26 H 1.07993 * 119.96905 * 179.72366 * 5 4 3 27 27 H 0.97004 * 120.00201 * 180.02562 * 11 10 8 28 28 H 0.96998 * 120.00076 * 180.02562 * 19 18 16 29 29 H 0.97002 * 119.99969 * 0.03134 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0366 -1.1936 5 6 2.8269 3.3362 -1.1989 6 6 2.9569 4.0351 -0.0024 7 16 3.5444 5.6963 -0.0101 8 6 3.5963 5.9945 -1.7459 9 1 3.2147 5.2535 -2.4327 10 6 4.1271 7.1810 -2.2302 11 7 4.5925 8.0839 -1.3931 12 14 4.1828 7.4969 -4.0705 13 1 2.9307 8.1732 -4.4947 14 1 5.3458 8.3634 -4.3890 15 1 4.3160 6.2050 -4.7907 16 6 2.6278 3.4184 1.1993 17 17 2.7946 4.2827 2.6956 18 6 2.1650 2.1095 1.1996 19 7 1.8334 1.4851 2.4050 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.2571 1.4979 -2.1238 26 1 3.0867 3.8123 -2.1328 27 1 4.9634 8.9138 -1.7317 28 1 1.5104 0.5704 2.4046 29 1 1.9261 1.9663 3.2421 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238290235.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:48 Heat of formation + Delta-G solvation = -1.514233 kcal Electronic energy + Delta-G solvation = -14421.728389 eV Core-core repulsion = 11881.836462 eV Total energy + Delta-G solvation = -2539.891928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.00637 -35.79077 -34.28594 -33.12900 -32.72627 -28.99510 -28.08935 -25.70434 -23.67969 -21.77447 -20.48510 -18.22465 -16.87662 -16.58611 -15.53124 -14.89531 -14.29488 -13.99102 -13.68598 -13.47179 -13.35123 -13.05527 -12.44953 -12.01262 -11.50865 -11.21414 -11.09707 -11.07757 -10.84953 -10.72855 -10.50444 -10.37612 -10.12476 -9.77893 -9.33241 -8.59961 -8.39945 -7.12462 -6.49323 -6.46846 -4.19461 1.88947 2.20134 2.87504 3.11739 3.13583 3.20327 3.41287 4.03362 4.23495 4.32024 4.94164 5.12975 5.17933 5.19597 5.55626 5.65390 5.81020 5.87395 6.01656 6.14501 6.22628 6.29924 6.47394 6.72623 7.03129 7.21991 7.32290 7.51594 7.85732 8.05962 8.17818 8.99697 10.58107 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.025963 B = 0.006882 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.205718 B = 4067.651277 C = 5045.855956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C -0.202 4.202 4 C -0.050 4.050 5 C -0.186 4.186 6 C -0.043 4.043 7 S 0.085 5.915 8 C -0.559 4.559 9 H 0.095 0.905 10 C 0.079 3.921 11 N -0.863 5.863 12 Si 0.924 3.076 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.267 1.267 16 C -0.126 4.126 17 Cl -0.083 7.083 18 C 0.247 3.753 19 N -0.879 5.879 20 H 0.048 0.952 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.274 0.726 28 H 0.394 0.606 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 -12.401 3.728 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.212 4.212 4 C -0.071 4.071 5 C -0.213 4.213 6 C -0.161 4.161 7 S 0.344 5.656 8 C -0.706 4.706 9 H 0.113 0.887 10 C -0.131 4.131 11 N -0.497 5.497 12 Si 0.749 3.251 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.192 1.192 16 C -0.168 4.168 17 Cl -0.054 7.054 18 C 0.141 3.859 19 N -0.421 5.421 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.131 0.869 26 H 0.156 0.844 27 H 0.084 0.916 28 H 0.223 0.777 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.710 -11.028 4.711 12.883 hybrid contribution -0.302 -0.641 -1.639 1.785 sum -5.011 -11.669 3.072 13.066 Atomic orbital electron populations 1.21799 0.95830 1.00613 1.02291 1.20150 0.95209 0.93095 1.01522 1.18886 1.14046 0.96933 0.91384 1.20665 0.95945 0.94365 0.96158 1.21179 1.07306 0.94957 0.97889 1.22430 0.98161 1.02221 0.93270 1.83715 1.71912 0.99512 1.10484 1.23483 1.47721 1.07166 0.92246 0.88725 1.25100 0.93381 0.94811 0.99855 1.70000 1.36749 1.07775 1.35150 0.86069 0.78134 0.78746 0.82151 1.19909 1.20537 1.19188 1.19608 1.18291 0.92700 0.86209 1.98271 1.96912 1.76815 1.33445 1.16976 0.93065 0.89433 0.86445 1.42520 1.76577 1.17148 1.05819 0.93279 0.92853 0.92550 0.91626 0.92471 0.86886 0.84358 0.91638 0.77720 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 37.16 0.37 -1.24 15 2 C -0.06 -0.75 5.49 -27.88 -0.15 -0.90 15 3 C -0.20 -3.25 5.16 -104.35 -0.54 -3.78 15 4 C -0.05 -0.87 9.66 -39.63 -0.38 -1.25 15 5 C -0.19 -3.91 9.22 -39.30 -0.36 -4.28 15 6 C -0.04 -0.96 6.10 -38.94 -0.24 -1.20 15 7 S 0.09 2.20 20.56 -107.50 -2.21 -0.01 15 8 C -0.56 -15.12 8.99 30.91 0.28 -14.84 15 9 H 0.10 2.44 4.97 -52.49 -0.26 2.18 15 10 C 0.08 2.12 5.49 -17.46 -0.10 2.03 15 11 N -0.86 -24.38 13.22 55.49 0.73 -23.65 15 12 Si 0.92 20.45 29.55 -169.99 -5.02 15.43 15 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 16 C -0.13 -2.54 6.36 -39.07 -0.25 -2.78 15 17 Cl -0.08 -1.54 26.47 -51.86 -1.37 -2.91 15 18 C 0.25 4.21 6.73 -83.77 -0.56 3.64 15 19 N -0.88 -11.57 8.95 32.42 0.29 -11.28 15 20 H 0.05 0.44 8.14 -51.93 -0.42 0.01 15 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.07 0.73 8.05 -51.93 -0.42 0.32 15 24 H 0.06 0.61 6.80 -51.93 -0.35 0.26 15 25 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.14 3.03 5.02 -52.49 -0.26 2.76 15 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 28 H 0.39 4.17 6.93 -40.82 -0.28 3.89 15 29 H 0.40 4.97 7.50 -40.82 -0.31 4.66 15 LS Contribution 273.23 15.07 4.12 4.12 Total: -1.00 -28.86 273.23 -8.11 -36.97 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -2.71 Total: 5.94 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -1.94 Total: -24.61 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 1.02 Total: -34.93 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.21 Total: -0.01 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.37 Total: -2.91 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.86 -8.11 -36.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238290235.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.459 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds