Wall clock time and date at job start Mon Mar 30 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47030 * 2 1 4 4 C 1.38268 * 119.93947 * 265.00106 * 3 2 1 5 5 C 1.38064 * 120.18268 * 180.28067 * 4 3 2 6 6 C 1.39176 * 120.05938 * 359.44729 * 5 4 3 7 7 S 1.76205 * 120.05503 * 180.30053 * 6 5 4 8 8 C 1.76194 * 100.00156 * 6.92734 * 7 6 5 9 9 H 1.07999 * 119.99856 * 5.67905 * 8 7 6 10 10 C 1.38716 * 120.00101 * 185.67338 * 8 7 6 11 11 N 1.31630 * 119.99835 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00174 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47034 * 90.00167 * 12 10 8 14 14 H 1.48490 * 109.47268 * 210.00086 * 12 10 8 15 15 H 1.48504 * 109.47262 * 330.00458 * 12 10 8 16 16 C 1.39029 * 119.88565 * 0.56945 * 6 5 4 17 17 Cl 1.73600 * 120.09475 * 179.72797 * 16 6 5 18 18 C 1.38823 * 119.81927 * 359.70763 * 16 6 5 19 19 N 1.39749 * 120.03544 * 179.97438 * 18 16 6 20 20 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46694 * 300.00054 * 1 2 3 22 22 H 1.09000 * 109.47199 * 59.99778 * 1 2 3 23 23 H 1.09001 * 109.46694 * 239.99946 * 2 1 3 24 24 H 1.09000 * 109.47199 * 120.00222 * 2 1 3 25 25 H 1.07997 * 119.90537 * 359.97438 * 4 3 2 26 26 H 1.07993 * 119.96905 * 179.72366 * 5 4 3 27 27 H 0.97004 * 120.00201 * 180.02562 * 11 10 8 28 28 H 0.96998 * 120.00076 * 180.02562 * 19 18 16 29 29 H 0.97002 * 119.99969 * 0.03134 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0366 -1.1936 5 6 2.8269 3.3362 -1.1989 6 6 2.9569 4.0351 -0.0024 7 16 3.5444 5.6963 -0.0101 8 6 3.5963 5.9945 -1.7459 9 1 3.2147 5.2535 -2.4327 10 6 4.1271 7.1810 -2.2302 11 7 4.5925 8.0839 -1.3931 12 14 4.1828 7.4969 -4.0705 13 1 2.9307 8.1732 -4.4947 14 1 5.3458 8.3634 -4.3890 15 1 4.3160 6.2050 -4.7907 16 6 2.6278 3.4184 1.1993 17 17 2.7946 4.2827 2.6956 18 6 2.1650 2.1095 1.1996 19 7 1.8334 1.4851 2.4050 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.2571 1.4979 -2.1238 26 1 3.0867 3.8123 -2.1328 27 1 4.9634 8.9138 -1.7317 28 1 1.5104 0.5704 2.4046 29 1 1.9261 1.9663 3.2421 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238290235.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:47 Heat of formation + Delta-G solvation = -18.747674 kcal Electronic energy + Delta-G solvation = -14422.475687 eV Core-core repulsion = 11881.836462 eV Total energy + Delta-G solvation = -2540.639226 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.42895 -37.28713 -35.65884 -34.72446 -34.27993 -30.35003 -29.54276 -27.63495 -24.86618 -23.23059 -21.78512 -20.07517 -18.28641 -18.00867 -17.19626 -16.55547 -15.86406 -15.32485 -15.03242 -14.96788 -14.58528 -14.49951 -13.92416 -13.25822 -13.01960 -12.96582 -12.72796 -12.47117 -12.19552 -12.07455 -11.92072 -11.79366 -11.66354 -11.35030 -11.17796 -10.49752 -9.98585 -8.65535 -8.46716 -8.19279 -6.23710 0.38502 0.69069 1.23092 1.37135 1.40281 1.50066 1.70651 2.21364 2.80579 2.95492 3.01104 3.22447 4.01796 4.15127 4.37490 4.52403 4.63325 4.71921 4.76272 4.94852 5.11783 5.16332 5.28483 5.46820 5.49130 5.59032 5.76043 5.96053 6.17215 6.54134 6.97446 6.99871 8.61896 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.025963 B = 0.006882 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.205718 B = 4067.651277 C = 5045.855956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C -0.183 4.183 4 C -0.047 4.047 5 C -0.206 4.206 6 C -0.060 4.060 7 S 0.003 5.997 8 C -0.570 4.570 9 H 0.098 0.902 10 C 0.024 3.976 11 N -0.905 5.905 12 Si 0.995 3.005 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.258 1.258 16 C -0.139 4.139 17 Cl -0.077 7.077 18 C 0.248 3.752 19 N -0.859 5.859 20 H 0.075 0.925 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.146 0.854 26 H 0.121 0.879 27 H 0.276 0.724 28 H 0.411 0.589 29 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -15.631 3.243 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.068 4.068 5 C -0.233 4.233 6 C -0.177 4.177 7 S 0.257 5.743 8 C -0.717 4.717 9 H 0.116 0.884 10 C -0.181 4.181 11 N -0.540 5.540 12 Si 0.816 3.184 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.182 1.182 16 C -0.180 4.180 17 Cl -0.049 7.049 18 C 0.140 3.860 19 N -0.402 5.402 20 H 0.094 0.906 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.164 0.836 26 H 0.139 0.861 27 H 0.085 0.915 28 H 0.243 0.757 29 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.964 -14.362 4.271 16.127 hybrid contribution -0.046 0.062 -1.336 1.338 sum -6.011 -14.300 2.934 15.787 Atomic orbital electron populations 1.21770 0.94601 1.02260 1.01660 1.20297 0.96059 0.90070 1.03525 1.19470 1.10771 0.98760 0.90243 1.21003 0.94530 0.92934 0.98296 1.21181 1.08816 0.96604 0.96730 1.22300 0.99986 1.00397 0.95025 1.83672 1.75507 1.03899 1.11186 1.23745 1.47820 1.07609 0.92489 0.88425 1.26100 0.92899 0.94405 1.04741 1.70129 1.38209 1.08391 1.37263 0.84997 0.78353 0.78901 0.76129 1.19213 1.19901 1.18186 1.19853 1.18353 0.93902 0.85896 1.98267 1.96917 1.77038 1.32639 1.17110 0.92171 0.88455 0.88296 1.42456 1.75203 1.17817 1.04713 0.90567 0.93327 0.93445 0.89868 0.90389 0.83630 0.86092 0.91500 0.75682 0.76955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.89 71.98 0.71 -1.77 15 2 C -0.06 -1.18 5.49 29.85 0.16 -1.01 15 3 C -0.18 -5.24 5.16 -19.69 -0.10 -5.35 15 4 C -0.05 -1.52 9.66 22.24 0.21 -1.31 15 5 C -0.21 -8.71 9.22 22.45 0.21 -8.51 15 6 C -0.06 -2.78 6.10 22.69 0.14 -2.64 15 7 S 0.00 0.18 20.56 -56.49 -1.16 -0.99 15 8 C -0.57 -32.12 8.99 67.93 0.61 -31.51 15 9 H 0.10 5.25 4.97 -2.91 -0.01 5.23 15 10 C 0.02 1.34 5.49 84.84 0.47 1.81 15 11 N -0.90 -53.21 13.22 21.63 0.29 -52.93 15 12 Si 0.99 42.76 29.55 68.60 2.03 44.79 15 13 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 15 H -0.26 -10.53 7.11 99.48 0.71 -9.83 15 16 C -0.14 -5.54 6.36 22.60 0.14 -5.40 15 17 Cl -0.08 -2.88 26.47 -2.72 -0.07 -2.95 15 18 C 0.25 7.84 6.73 38.19 0.26 8.10 15 19 N -0.86 -19.71 8.95 -51.35 -0.46 -20.17 15 20 H 0.08 0.94 8.14 -2.39 -0.02 0.92 15 21 H 0.05 0.88 8.14 -2.39 -0.02 0.86 15 22 H 0.05 0.91 8.14 -2.39 -0.02 0.89 15 23 H 0.08 1.38 8.05 -2.39 -0.02 1.36 15 24 H 0.08 1.22 6.80 -2.39 -0.02 1.20 15 25 H 0.15 3.75 8.06 -2.91 -0.02 3.73 15 26 H 0.12 5.46 5.02 -2.91 -0.01 5.44 15 27 H 0.28 15.02 8.31 -92.71 -0.77 14.25 15 28 H 0.41 6.82 6.93 -92.71 -0.64 6.18 15 29 H 0.40 8.93 7.50 -92.71 -0.70 8.24 15 Total: -1.00 -65.69 273.23 3.30 -62.39 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.13 Total: 17.43 kcal Atomic # 6 Polarization: -50.39 SS G_CDS: 2.81 Total: -47.58 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -0.17 Total: -73.10 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -1.16 Total: -0.99 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.07 Total: -2.95 kcal Total: -65.69 3.30 -62.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238290235.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.643 kcal (2) G-P(sol) polarization free energy of solvation -65.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds