Wall clock time and date at job start Mon Mar 30 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47302 * 2 1 4 4 C 1.38254 * 119.93661 * 265.01747 * 3 2 1 5 5 C 1.38148 * 120.15166 * 179.97438 * 4 3 2 6 6 Cl 1.73596 * 119.98631 * 180.02562 * 5 4 3 7 7 C 1.39276 * 120.03262 * 0.02562 * 5 4 3 8 8 S 1.76201 * 120.05924 * 180.02562 * 7 5 4 9 9 C 1.76202 * 100.00005 * 186.90134 * 8 7 5 10 10 H 1.08003 * 120.00038 * 5.67615 * 9 8 7 11 11 C 1.38704 * 119.99848 * 185.66803 * 9 8 7 12 12 N 1.31633 * 120.00326 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00056 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47208 * 90.00030 * 13 11 9 15 15 H 1.48503 * 109.47440 * 210.00559 * 13 11 9 16 16 H 1.48501 * 109.47004 * 330.00074 * 13 11 9 17 17 C 1.38950 * 119.88253 * 359.97438 * 7 5 4 18 18 C 1.38726 * 119.84691 * 0.02562 * 17 7 5 19 19 N 1.39746 * 120.01763 * 180.27539 * 18 17 7 20 20 H 1.08999 * 109.47540 * 300.00534 * 1 2 3 21 21 H 1.09006 * 109.46708 * 60.00491 * 1 2 3 22 22 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47431 * 239.98923 * 2 1 3 24 24 H 1.09006 * 109.46708 * 119.99509 * 2 1 3 25 25 H 1.07992 * 119.92245 * 359.95909 * 4 3 2 26 26 H 0.97000 * 120.00648 * 179.97438 * 12 11 9 27 27 H 1.07996 * 120.07477 * 180.02562 * 17 7 5 28 28 H 0.96995 * 120.00492 * 179.72553 * 19 18 17 29 29 H 0.97005 * 119.99775 * 359.72314 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3605 2.0366 -1.1935 5 6 2.8210 3.3391 -1.1988 6 17 3.2311 4.1083 -2.7000 7 6 2.9563 4.0354 -0.0002 8 16 3.5429 5.6969 -0.0061 9 6 3.7022 5.9712 1.7272 10 1 3.5384 5.1589 2.4198 11 6 4.0381 7.2304 2.2020 12 7 4.2374 8.2206 1.3578 13 14 4.2078 7.5212 4.0394 14 1 5.6101 7.2634 4.4540 15 1 3.8493 8.9278 4.3532 16 1 3.2984 6.6036 4.7718 17 6 2.6270 3.4178 1.2002 18 6 2.1651 2.1097 1.1997 19 7 1.8273 1.4871 2.4043 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5140 -0.8898 24 1 1.8933 -0.5138 0.8901 25 1 2.2568 1.4981 -2.1239 26 1 4.4720 9.1013 1.6898 27 1 2.7304 3.9550 2.1314 28 1 1.5006 0.5738 2.4034 29 1 1.9197 1.9683 3.2416 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238326146.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:50 Heat of formation + Delta-G solvation = -2.232869 kcal Electronic energy + Delta-G solvation = -14408.053080 eV Core-core repulsion = 11868.129990 eV Total energy + Delta-G solvation = -2539.923090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.99212 -35.84558 -33.83251 -33.36887 -32.73335 -29.39771 -27.64064 -25.80315 -23.70716 -21.85112 -20.46647 -18.15635 -17.00910 -16.29914 -15.59177 -14.95752 -14.37658 -14.12313 -13.63060 -13.41608 -13.11157 -13.01797 -12.46914 -12.01922 -11.57893 -11.33854 -11.22581 -11.13869 -11.06185 -10.79633 -10.44823 -10.16941 -9.84687 -9.72285 -9.32396 -8.63184 -8.55817 -7.03998 -6.51439 -6.48765 -4.20544 1.95333 2.11622 2.95884 3.10451 3.11505 3.17729 3.42081 3.99577 4.27927 4.32269 4.92680 5.10904 5.16383 5.20899 5.50450 5.55120 5.80909 5.89939 5.98231 6.17400 6.27667 6.38234 6.42782 6.77817 6.92291 7.04774 7.23918 7.47506 7.92242 8.12233 8.15693 8.98006 10.56821 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.007463 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.780898 B = 3751.122354 C = 4948.931666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.200 4.200 4 C -0.045 4.045 5 C -0.098 4.098 6 Cl -0.087 7.087 7 C -0.041 4.041 8 S 0.085 5.915 9 C -0.558 4.558 10 H 0.093 0.907 11 C 0.079 3.921 12 N -0.862 5.862 13 Si 0.923 3.077 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.269 1.269 17 C -0.212 4.212 18 C 0.239 3.761 19 N -0.881 5.881 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.274 0.726 27 H 0.140 0.860 28 H 0.392 0.608 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 -12.604 -0.635 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.209 4.209 4 C -0.066 4.066 5 C -0.135 4.135 6 Cl -0.059 7.059 7 C -0.160 4.160 8 S 0.343 5.657 9 C -0.705 4.705 10 H 0.110 0.890 11 C -0.132 4.132 12 N -0.496 5.496 13 Si 0.749 3.251 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.193 1.193 17 C -0.243 4.243 18 C 0.133 3.867 19 N -0.421 5.421 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.137 0.863 26 H 0.084 0.916 27 H 0.158 0.842 28 H 0.220 0.780 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.366 -11.219 -1.730 12.162 hybrid contribution -0.218 -0.662 2.339 2.440 sum -4.584 -11.881 0.608 12.749 Atomic orbital electron populations 1.21798 0.95785 1.00644 1.02304 1.20157 0.95244 0.93102 1.01554 1.18863 1.13673 0.96983 0.91424 1.20322 0.96980 0.92260 0.97021 1.20007 1.13710 0.94295 0.85497 1.98289 1.92821 1.81857 1.32904 1.22382 0.98096 1.02338 0.93162 1.83756 1.71369 1.00175 1.10389 1.23442 1.55466 0.99233 0.92401 0.88961 1.25093 0.93614 0.94697 0.99748 1.69996 1.42641 1.01919 1.35002 0.86081 0.78912 0.77922 0.82215 1.19920 1.20504 1.19344 1.20751 1.10830 0.94153 0.98608 1.17510 0.92189 0.91315 0.85681 1.42501 1.76413 1.17281 1.05940 0.92824 0.92552 0.93251 0.91681 0.92376 0.86303 0.91618 0.84237 0.77966 0.77751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.90 37.16 0.37 -1.24 15 2 C -0.06 -0.76 5.49 -27.88 -0.15 -0.91 15 3 C -0.20 -3.19 5.16 -104.34 -0.54 -3.73 15 4 C -0.04 -0.77 9.44 -39.61 -0.37 -1.14 15 5 C -0.10 -1.98 6.34 -39.23 -0.25 -2.23 15 6 Cl -0.09 -1.67 27.83 -51.86 -1.44 -3.11 15 7 C -0.04 -0.93 6.10 -38.93 -0.24 -1.17 15 8 S 0.09 2.19 20.55 -107.50 -2.21 -0.02 15 9 C -0.56 -15.02 8.99 30.90 0.28 -14.75 15 10 H 0.09 2.37 4.97 -52.48 -0.26 2.11 15 11 C 0.08 2.11 5.49 -17.46 -0.10 2.02 15 12 N -0.86 -24.29 13.22 55.49 0.73 -23.56 15 13 Si 0.92 20.32 29.55 -169.99 -5.02 15.29 15 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 16 H -0.27 -5.74 7.11 56.52 0.40 -5.33 15 17 C -0.21 -4.40 9.07 -39.14 -0.35 -4.75 15 18 C 0.24 4.11 6.73 -83.80 -0.56 3.54 15 19 N -0.88 -11.59 8.99 32.40 0.29 -11.30 15 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 15 22 H 0.05 0.44 8.14 -51.93 -0.42 0.01 15 23 H 0.06 0.72 8.05 -51.93 -0.42 0.30 15 24 H 0.06 0.63 6.82 -51.93 -0.35 0.27 15 25 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 27 H 0.14 3.03 5.03 -52.49 -0.26 2.76 15 28 H 0.39 4.19 6.93 -40.82 -0.28 3.90 15 29 H 0.39 4.79 8.84 -40.82 -0.36 4.43 15 LS Contribution 275.60 15.07 4.15 4.15 Total: -1.00 -28.90 275.60 -8.19 -37.08 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -2.77 Total: 5.81 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -1.92 Total: -24.35 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 1.02 Total: -34.85 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.21 Total: -0.02 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -1.44 Total: -3.11 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.90 -8.19 -37.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238326146.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.849 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds