Wall clock time and date at job start Mon Mar 30 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47302 * 2 1 4 4 C 1.38254 * 119.93661 * 265.01747 * 3 2 1 5 5 C 1.38148 * 120.15166 * 179.97438 * 4 3 2 6 6 Cl 1.73596 * 119.98631 * 180.02562 * 5 4 3 7 7 C 1.39276 * 120.03262 * 0.02562 * 5 4 3 8 8 S 1.76201 * 120.05924 * 180.02562 * 7 5 4 9 9 C 1.76202 * 100.00005 * 186.90134 * 8 7 5 10 10 H 1.08003 * 120.00038 * 5.67615 * 9 8 7 11 11 C 1.38704 * 119.99848 * 185.66803 * 9 8 7 12 12 N 1.31633 * 120.00326 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00056 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47208 * 90.00030 * 13 11 9 15 15 H 1.48503 * 109.47440 * 210.00559 * 13 11 9 16 16 H 1.48501 * 109.47004 * 330.00074 * 13 11 9 17 17 C 1.38950 * 119.88253 * 359.97438 * 7 5 4 18 18 C 1.38726 * 119.84691 * 0.02562 * 17 7 5 19 19 N 1.39746 * 120.01763 * 180.27539 * 18 17 7 20 20 H 1.08999 * 109.47540 * 300.00534 * 1 2 3 21 21 H 1.09006 * 109.46708 * 60.00491 * 1 2 3 22 22 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47431 * 239.98923 * 2 1 3 24 24 H 1.09006 * 109.46708 * 119.99509 * 2 1 3 25 25 H 1.07992 * 119.92245 * 359.95909 * 4 3 2 26 26 H 0.97000 * 120.00648 * 179.97438 * 12 11 9 27 27 H 1.07996 * 120.07477 * 180.02562 * 17 7 5 28 28 H 0.96995 * 120.00492 * 179.72553 * 19 18 17 29 29 H 0.97005 * 119.99775 * 359.72314 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3605 2.0366 -1.1935 5 6 2.8210 3.3391 -1.1988 6 17 3.2311 4.1083 -2.7000 7 6 2.9563 4.0354 -0.0002 8 16 3.5429 5.6969 -0.0061 9 6 3.7022 5.9712 1.7272 10 1 3.5384 5.1589 2.4198 11 6 4.0381 7.2304 2.2020 12 7 4.2374 8.2206 1.3578 13 14 4.2078 7.5212 4.0394 14 1 5.6101 7.2634 4.4540 15 1 3.8493 8.9278 4.3532 16 1 3.2984 6.6036 4.7718 17 6 2.6270 3.4178 1.2002 18 6 2.1651 2.1097 1.1997 19 7 1.8273 1.4871 2.4043 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5140 -0.8898 24 1 1.8933 -0.5138 0.8901 25 1 2.2568 1.4981 -2.1239 26 1 4.4720 9.1013 1.6898 27 1 2.7304 3.9550 2.1314 28 1 1.5006 0.5738 2.4034 29 1 1.9197 1.9683 3.2416 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238326146.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:50 Heat of formation + Delta-G solvation = -19.542889 kcal Electronic energy + Delta-G solvation = -14408.803699 eV Core-core repulsion = 11868.129990 eV Total energy + Delta-G solvation = -2540.673709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.41254 -37.34201 -35.19303 -34.78273 -34.48930 -30.75765 -29.01087 -27.78051 -24.88498 -23.31704 -21.77016 -19.99241 -18.38662 -17.74174 -17.23550 -16.65575 -15.90900 -15.41858 -14.92086 -14.75846 -14.67640 -14.43419 -13.86612 -13.27550 -13.11135 -12.98458 -12.84916 -12.62878 -12.39247 -12.06175 -11.83429 -11.69482 -11.49571 -11.30471 -11.01410 -10.52099 -10.13606 -8.61045 -8.47217 -8.19280 -6.24172 0.45074 0.61455 1.25196 1.38241 1.41081 1.49557 1.73638 2.19706 2.80029 2.95312 3.04666 3.25185 3.98787 4.06117 4.32532 4.59513 4.65300 4.65801 4.90013 4.96878 5.06651 5.15933 5.31374 5.40036 5.46897 5.55256 5.63083 5.89363 6.14598 6.61683 6.96385 7.06459 8.61398 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.007463 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.780898 B = 3751.122354 C = 4948.931666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.181 4.181 4 C -0.043 4.043 5 C -0.112 4.112 6 Cl -0.086 7.086 7 C -0.058 4.058 8 S 0.002 5.998 9 C -0.568 4.568 10 H 0.097 0.903 11 C 0.024 3.976 12 N -0.904 5.904 13 Si 0.995 3.005 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.257 1.257 17 C -0.229 4.229 18 C 0.243 3.757 19 N -0.862 5.862 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.150 0.850 26 H 0.276 0.724 27 H 0.124 0.876 28 H 0.409 0.591 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.905 -15.873 0.432 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 C -0.190 4.190 4 C -0.064 4.064 5 C -0.148 4.148 6 Cl -0.058 7.058 7 C -0.175 4.175 8 S 0.256 5.744 9 C -0.715 4.715 10 H 0.114 0.886 11 C -0.182 4.182 12 N -0.539 5.539 13 Si 0.816 3.184 14 H -0.193 1.193 15 H -0.200 1.200 16 H -0.181 1.181 17 C -0.260 4.260 18 C 0.135 3.865 19 N -0.403 5.403 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.167 0.833 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.240 0.760 29 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.497 -14.591 -0.643 15.605 hybrid contribution 0.018 0.053 1.941 1.942 sum -5.479 -14.538 1.298 15.590 Atomic orbital electron populations 1.21770 0.94559 1.02285 1.01680 1.20303 0.96096 0.90107 1.03529 1.19438 1.10497 0.98792 0.90270 1.20721 0.95712 0.91052 0.98934 1.20256 1.14247 0.95357 0.84967 1.98282 1.92887 1.82137 1.32461 1.22257 0.99956 1.00339 0.94919 1.83749 1.75027 1.04412 1.11216 1.23701 1.55518 0.99727 0.92556 0.88571 1.26101 0.93158 0.94268 1.04672 1.70130 1.44249 1.02400 1.37165 0.84998 0.79162 0.78040 0.76161 1.19276 1.19966 1.18124 1.20725 1.12002 0.95803 0.97462 1.17534 0.91169 0.90148 0.87666 1.42433 1.74988 1.17936 1.04935 0.93390 0.93340 0.90551 0.89848 0.90420 0.83285 0.91502 0.85828 0.75971 0.76911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.90 71.98 0.71 -1.76 15 2 C -0.06 -1.19 5.49 29.85 0.16 -1.03 15 3 C -0.18 -5.16 5.16 -19.68 -0.10 -5.26 15 4 C -0.04 -1.38 9.44 22.25 0.21 -1.17 15 5 C -0.11 -4.48 6.34 22.50 0.14 -4.34 15 6 Cl -0.09 -3.33 27.83 -2.72 -0.08 -3.41 15 7 C -0.06 -2.65 6.10 22.69 0.14 -2.51 15 8 S 0.00 0.11 20.55 -56.49 -1.16 -1.05 15 9 C -0.57 -31.76 8.99 67.93 0.61 -31.15 15 10 H 0.10 5.10 4.97 -2.91 -0.01 5.08 15 11 C 0.02 1.31 5.49 84.83 0.47 1.77 15 12 N -0.90 -53.03 13.22 21.63 0.29 -52.74 15 13 Si 1.00 42.31 29.55 68.60 2.03 44.34 15 14 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 15 H -0.27 -11.32 7.11 99.48 0.71 -10.62 15 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 17 C -0.23 -9.51 9.07 22.56 0.20 -9.30 15 18 C 0.24 7.78 6.73 38.17 0.26 8.04 15 19 N -0.86 -19.80 8.99 -51.40 -0.46 -20.26 15 20 H 0.05 0.87 8.14 -2.39 -0.02 0.85 15 21 H 0.05 0.92 8.14 -2.38 -0.02 0.90 15 22 H 0.08 0.94 8.14 -2.39 -0.02 0.92 15 23 H 0.08 1.37 8.05 -2.39 -0.02 1.35 15 24 H 0.08 1.23 6.82 -2.38 -0.02 1.21 15 25 H 0.15 3.83 8.06 -2.91 -0.02 3.81 15 26 H 0.28 14.98 8.31 -92.71 -0.77 14.21 15 27 H 0.12 5.47 5.03 -2.91 -0.01 5.46 15 28 H 0.41 6.88 6.93 -92.71 -0.64 6.24 15 29 H 0.40 8.63 8.84 -92.70 -0.82 7.81 15 Total: -1.00 -65.65 275.60 3.16 -62.49 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.26 Total: 17.33 kcal Atomic # 6 Polarization: -49.51 SS G_CDS: 2.80 Total: -46.71 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -0.18 Total: -73.00 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.16 Total: -1.05 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -0.08 Total: -3.41 kcal Total: -65.65 3.16 -62.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238326146.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.949 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds