Wall clock time and date at job start Mon Mar 30 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38267 * 119.97216 * 2 1 4 4 C 1.38214 * 120.06013 * 180.02562 * 3 2 1 5 5 C 1.38324 * 120.01193 * 0.25835 * 4 3 2 6 6 Cl 1.73595 * 120.02376 * 179.69995 * 5 4 3 7 7 C 1.38551 * 119.94940 * 359.44758 * 5 4 3 8 8 F 1.35097 * 120.02876 * 180.27718 * 7 5 4 9 9 C 1.38193 * 119.97583 * 180.02562 * 2 1 3 10 10 C 1.50694 * 120.00544 * 359.95974 * 9 2 1 11 11 C 1.53002 * 109.46868 * 264.97162 * 10 9 2 12 12 N 1.46893 * 109.47703 * 24.97366 * 10 9 2 13 13 C 1.50704 * 109.46935 * 144.97627 * 10 9 2 14 14 H 1.07997 * 120.00341 * 357.45792 * 13 10 9 15 15 C 1.37880 * 119.99705 * 177.45555 * 13 10 9 16 16 N 1.31513 * 120.00266 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99843 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.46973 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47006 * 119.99989 * 17 15 13 20 20 H 1.48504 * 109.47054 * 239.99875 * 17 15 13 21 21 H 1.09006 * 109.47205 * 96.38726 * 1 2 3 22 22 H 1.08998 * 109.47350 * 216.39048 * 1 2 3 23 23 H 1.08997 * 109.47456 * 336.38811 * 1 2 3 24 24 H 1.08000 * 119.96871 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.99191 * 179.97438 * 4 3 2 26 26 H 1.08999 * 109.46706 * 61.70416 * 11 10 9 27 27 H 1.08996 * 109.47344 * 181.69955 * 11 10 9 28 28 H 1.09000 * 109.47350 * 301.70516 * 11 10 9 29 29 H 1.00904 * 110.99743 * 60.00029 * 12 10 9 30 30 H 1.00899 * 111.00574 * 183.95131 * 12 10 9 31 31 H 0.96997 * 120.00518 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5799 1.1999 -0.0005 5 6 4.2736 0.0032 -0.0065 6 17 6.0095 0.0055 -0.0150 7 6 3.5819 -1.1973 -0.0003 8 9 4.2579 -2.3670 -0.0004 9 6 2.1975 -1.1971 -0.0005 10 6 1.4436 -2.5019 -0.0002 11 6 1.2988 -3.0068 1.4368 12 7 0.1112 -2.2979 -0.5841 13 6 2.1993 -3.5188 -0.8162 14 1 3.1108 -3.2362 -1.3217 15 6 1.7268 -4.8102 -0.9174 16 7 0.6165 -5.1544 -0.3024 17 14 2.6639 -6.0710 -1.9283 18 1 3.8712 -5.4363 -2.5154 19 1 3.0727 -7.2005 -1.0553 20 1 1.7922 -6.5782 -3.0184 21 1 -0.3634 -0.1143 -1.0213 22 1 -0.3634 -0.8272 0.6097 23 1 -0.3634 0.9416 0.4116 24 1 1.6568 2.1325 0.0004 25 1 4.1183 2.1361 -0.0010 26 1 0.7262 -2.2852 2.0195 27 1 0.7800 -3.9654 1.4346 28 1 2.2870 -3.1294 1.8802 29 1 0.1799 -1.9642 -1.5339 30 1 -0.4378 -3.1431 -0.5367 31 1 0.2843 -6.0629 -0.3732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238480314.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:10 Heat of formation + Delta-G solvation = -28.034986 kcal Electronic energy + Delta-G solvation = -17731.671618 eV Core-core repulsion = 14760.249583 eV Total energy + Delta-G solvation = -2971.422035 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.69346 -40.50107 -37.89652 -36.95673 -33.94392 -32.59576 -30.96456 -29.35980 -27.64670 -26.92579 -24.09161 -22.52182 -21.07967 -18.85549 -17.92208 -17.28548 -17.16873 -16.45311 -16.32209 -15.82245 -15.17037 -14.74055 -14.48747 -14.11368 -13.90562 -13.56421 -13.40844 -13.21862 -12.93060 -12.82499 -12.64406 -12.40055 -12.29510 -12.16854 -12.04579 -11.81382 -11.53097 -11.08635 -10.59910 -9.47659 -9.32476 -8.82555 -8.00688 -6.23466 0.17049 0.34290 1.09414 1.31972 1.37750 1.47185 2.38997 2.65702 3.12337 3.37651 3.90767 4.11389 4.26308 4.37415 4.50393 4.79605 5.00039 5.01925 5.07986 5.13415 5.17415 5.29705 5.32160 5.53844 5.64776 5.76477 5.90135 5.94992 6.17820 6.21909 6.72888 6.94690 7.16097 7.48588 8.87627 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.020912 B = 0.009690 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.625767 B = 2888.923204 C = 3907.994166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.047 4.047 3 C -0.121 4.121 4 C -0.088 4.088 5 C -0.101 4.101 6 Cl -0.067 7.067 7 C 0.091 3.909 8 F -0.136 7.136 9 C -0.098 4.098 10 C 0.266 3.734 11 C -0.116 4.116 12 N -0.814 5.814 13 C -0.549 4.549 14 H 0.047 0.953 15 C 0.034 3.966 16 N -0.902 5.902 17 Si 0.938 3.062 18 H -0.284 1.284 19 H -0.285 1.285 20 H -0.277 1.277 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.062 0.938 24 H 0.171 0.829 25 H 0.167 0.833 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.011 0.989 29 H 0.318 0.682 30 H 0.341 0.659 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 12.417 0.565 12.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.139 4.139 4 C -0.107 4.107 5 C -0.129 4.129 6 Cl -0.038 7.038 7 C 0.071 3.929 8 F -0.115 7.115 9 C -0.100 4.100 10 C 0.174 3.826 11 C -0.174 4.174 12 N -0.342 5.342 13 C -0.589 4.589 14 H 0.065 0.935 15 C -0.166 4.166 16 N -0.542 5.542 17 Si 0.765 3.235 18 H -0.209 1.209 19 H -0.211 1.211 20 H -0.203 1.203 21 H 0.091 0.909 22 H 0.108 0.892 23 H 0.081 0.919 24 H 0.188 0.812 25 H 0.185 0.815 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.031 0.969 29 H 0.128 0.872 30 H 0.156 0.844 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.372 12.733 1.183 12.862 hybrid contribution 1.512 -2.349 -1.203 3.041 sum 2.883 10.385 -0.020 10.778 Atomic orbital electron populations 1.21003 0.88108 1.02066 1.03621 1.20259 0.98669 0.90762 0.95093 1.21442 0.92944 0.98696 1.00826 1.21164 0.94572 0.95869 0.99064 1.21128 0.84994 0.94336 1.12419 1.98325 1.09322 1.98923 1.97271 1.17686 0.90428 0.80392 1.04416 1.91474 1.80009 1.46485 1.93508 1.20433 0.90887 0.98262 1.00423 1.17120 0.86819 0.86160 0.92474 1.21604 0.98205 1.01951 0.95637 1.60220 1.15106 1.36468 1.22440 1.22288 1.09790 0.96321 1.30471 0.93481 1.25394 0.95735 0.99312 0.96199 1.69764 1.21529 1.19490 1.43407 0.85826 0.78913 0.79667 0.79049 1.20887 1.21078 1.20308 0.90940 0.89211 0.91937 0.81165 0.81538 0.94833 0.90744 0.96940 0.87172 0.84405 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.67 8.14 71.24 0.58 -2.09 16 2 C -0.05 -1.57 5.84 -19.87 -0.12 -1.68 16 3 C -0.12 -3.15 9.67 22.27 0.22 -2.93 16 4 C -0.09 -2.38 9.83 22.28 0.22 -2.16 16 5 C -0.10 -3.51 6.33 22.36 0.14 -3.37 16 6 Cl -0.07 -2.13 28.62 -2.72 -0.08 -2.21 16 7 C 0.09 3.88 6.80 22.39 0.15 4.03 16 8 F -0.14 -6.64 13.54 44.97 0.61 -6.03 16 9 C -0.10 -4.10 4.77 -19.83 -0.09 -4.19 16 10 C 0.27 12.37 0.48 2.04 0.00 12.38 16 11 C -0.12 -5.55 8.45 71.98 0.61 -4.94 16 12 N -0.81 -34.09 4.71 -157.52 -0.74 -34.83 16 13 C -0.55 -29.11 6.85 25.60 0.18 -28.93 16 14 H 0.05 2.66 5.68 -2.91 -0.02 2.64 16 15 C 0.03 1.78 5.22 84.66 0.44 2.22 16 16 N -0.90 -47.38 9.55 21.45 0.20 -47.18 16 17 Si 0.94 43.89 29.54 68.60 2.03 45.92 16 18 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H 0.07 2.07 7.07 -2.38 -0.02 2.05 16 22 H 0.09 3.07 5.70 -2.39 -0.01 3.05 16 23 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 24 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 25 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 26 H 0.03 1.44 7.78 -2.39 -0.02 1.42 16 27 H 0.07 3.86 5.82 -2.39 -0.01 3.85 16 28 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.32 12.95 8.06 -89.69 -0.72 12.23 16 30 H 0.34 15.68 7.19 -89.69 -0.65 15.04 16 31 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -56.55 267.56 4.16 -52.39 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.18 Total: 23.61 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 2.32 Total: -31.66 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -0.54 Total: -82.01 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.61 Total: -6.03 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.21 kcal Total: -56.55 4.16 -52.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238480314.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.352 kcal (2) G-P(sol) polarization free energy of solvation -56.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds