Wall clock time and date at job start Mon Mar 30 2020 07:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38266 * 119.96978 * 2 1 4 4 C 1.38220 * 120.05900 * 180.23234 * 3 2 1 5 5 C 1.38319 * 120.01037 * 359.49586 * 4 3 2 6 6 Cl 1.73596 * 120.02673 * 180.27727 * 5 4 3 7 7 C 1.38556 * 119.95205 * 0.25177 * 5 4 3 8 8 F 1.35093 * 120.02902 * 180.02562 * 7 5 4 9 9 C 1.38190 * 119.97965 * 179.72656 * 2 1 3 10 10 C 1.50703 * 120.00337 * 0.04039 * 9 2 1 11 11 C 1.52998 * 109.46856 * 95.00457 * 10 9 2 12 12 N 1.46900 * 109.47036 * 335.00422 * 10 9 2 13 13 C 1.50699 * 109.47209 * 215.00180 * 10 9 2 14 14 H 1.08005 * 119.99693 * 2.55547 * 13 10 9 15 15 C 1.37878 * 120.00250 * 182.55411 * 13 10 9 16 16 N 1.31514 * 119.99627 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99905 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.47110 * 60.00074 * 17 15 13 19 19 H 1.48503 * 109.46618 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47133 * 299.99720 * 17 15 13 21 21 H 1.09002 * 109.47408 * 263.89385 * 1 2 3 22 22 H 1.09000 * 109.47654 * 23.89201 * 1 2 3 23 23 H 1.08995 * 109.47281 * 143.89750 * 1 2 3 24 24 H 1.07999 * 119.97624 * 359.97438 * 3 2 1 25 25 H 1.07998 * 119.99525 * 179.76899 * 4 3 2 26 26 H 1.08998 * 109.47452 * 58.34834 * 11 10 9 27 27 H 1.09005 * 109.46757 * 178.35354 * 11 10 9 28 28 H 1.09004 * 109.47148 * 298.34495 * 11 10 9 29 29 H 1.00906 * 110.99518 * 176.04337 * 12 10 9 30 30 H 1.00897 * 111.00282 * 299.99760 * 12 10 9 31 31 H 0.96994 * 119.99809 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5799 1.1999 -0.0049 5 6 4.2736 0.0033 0.0008 6 17 6.0095 0.0055 0.0020 7 6 3.5819 -1.1973 0.0061 8 9 4.2579 -2.3669 0.0122 9 6 2.1975 -1.1970 0.0057 10 6 1.4436 -2.5019 0.0110 11 6 1.2983 -3.0127 -1.4238 12 7 0.1114 -2.2953 0.5945 13 6 2.1995 -3.5155 0.8309 14 1 3.1112 -3.2305 1.3351 15 6 1.7273 -4.8065 0.9375 16 7 0.6169 -5.1532 0.3240 17 14 2.6640 -6.0626 1.9545 18 1 2.7508 -5.5950 3.3613 19 1 1.9528 -7.3654 1.9093 20 1 4.0326 -6.2257 1.4017 21 1 -0.3634 -0.1093 1.0218 22 1 -0.3634 0.9396 -0.4162 23 1 -0.3633 -0.8303 -0.6055 24 1 1.6568 2.1326 -0.0004 25 1 4.1183 2.1361 -0.0086 26 1 2.2864 -3.1381 -1.8667 27 1 0.7787 -3.9709 -1.4175 28 1 0.7262 -2.2931 -2.0095 29 1 -0.4376 -3.1409 0.5507 30 1 0.1803 -1.9577 1.5428 31 1 0.2845 -6.0613 0.3993 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238480467.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:13 Heat of formation + Delta-G solvation = -14.255624 kcal Electronic energy + Delta-G solvation = -17730.526279 eV Core-core repulsion = 14759.701762 eV Total energy + Delta-G solvation = -2970.824517 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.05390 -39.07261 -36.45356 -35.37895 -32.23508 -31.06172 -29.45930 -27.70194 -26.04541 -25.11509 -22.61638 -21.09956 -19.42351 -17.07763 -16.43241 -15.69784 -15.56371 -14.81280 -14.59249 -14.19284 -13.60892 -13.23956 -12.84427 -12.52130 -12.40794 -12.10706 -12.04937 -11.55093 -11.25966 -10.97763 -10.92257 -10.88316 -10.70004 -10.62033 -10.35787 -10.24963 -9.75098 -9.38173 -8.61919 -7.99018 -7.96644 -7.06006 -6.06502 -4.22360 1.55083 1.72038 2.44311 3.26140 3.30383 3.35993 4.02054 4.34805 4.77446 5.12462 5.22361 5.44591 5.57970 5.75052 6.06790 6.17382 6.32097 6.48465 6.51759 6.55630 6.68913 6.86202 6.95180 7.08202 7.24087 7.34823 7.56446 7.71703 7.91215 8.12508 8.60933 8.83523 8.97571 9.47826 10.87994 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.009686 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.195324 B = 2889.928153 C = 3908.175213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.042 4.042 3 C -0.138 4.138 4 C -0.102 4.102 5 C -0.094 4.094 6 Cl -0.076 7.076 7 C 0.129 3.871 8 F -0.110 7.110 9 C -0.069 4.069 10 C 0.268 3.732 11 C -0.126 4.126 12 N -0.836 5.836 13 C -0.541 4.541 14 H 0.066 0.934 15 C 0.070 3.930 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.069 0.931 22 H 0.029 0.971 23 H 0.112 0.888 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.018 0.982 29 H 0.353 0.647 30 H 0.316 0.684 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 9.840 -0.814 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.157 4.157 4 C -0.121 4.121 5 C -0.122 4.122 6 Cl -0.047 7.047 7 C 0.108 3.892 8 F -0.088 7.088 9 C -0.071 4.071 10 C 0.177 3.823 11 C -0.184 4.184 12 N -0.366 5.366 13 C -0.581 4.581 14 H 0.084 0.916 15 C -0.131 4.131 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.130 0.870 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.048 0.952 27 H 0.114 0.886 28 H 0.037 0.963 29 H 0.169 0.831 30 H 0.126 0.874 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.685 10.141 -1.440 10.380 hybrid contribution 1.393 -1.632 1.304 2.511 sum 3.078 8.509 -0.136 9.050 Atomic orbital electron populations 1.21105 0.89327 1.01220 1.03651 1.19981 0.97742 0.90935 0.95615 1.20987 0.92946 0.98094 1.03647 1.20673 0.94209 0.95601 1.01617 1.20945 0.84277 0.94440 1.12527 1.98326 1.10151 1.98944 1.97322 1.17288 0.89890 0.80142 1.01901 1.91557 1.79532 1.44792 1.92920 1.20526 0.90789 0.98065 0.97699 1.17232 0.86296 0.85225 0.93550 1.21755 0.99430 1.02633 0.94585 1.60165 1.16416 1.37382 1.22605 1.22031 1.10321 0.95371 1.30376 0.91593 1.24901 0.94940 0.98091 0.95209 1.69672 1.21088 1.19523 1.42947 0.86611 0.80266 0.80295 0.80635 1.20373 1.21312 1.20105 0.91239 0.95248 0.86968 0.85590 0.85314 0.95248 0.88613 0.96308 0.83102 0.87449 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 8.14 36.00 0.29 -1.25 16 2 C -0.04 -0.75 5.84 -104.63 -0.61 -1.37 16 3 C -0.14 -2.12 9.67 -39.58 -0.38 -2.50 16 4 C -0.10 -1.58 9.83 -39.56 -0.39 -1.97 16 5 C -0.09 -1.71 6.33 -39.43 -0.25 -1.96 16 6 Cl -0.08 -1.26 28.62 -51.86 -1.48 -2.74 16 7 C 0.13 2.72 6.80 -39.39 -0.27 2.46 16 8 F -0.11 -2.58 13.54 2.25 0.03 -2.55 16 9 C -0.07 -1.45 4.77 -104.56 -0.50 -1.95 16 10 C 0.27 6.17 0.48 -133.91 -0.06 6.11 16 11 C -0.13 -2.96 8.44 37.16 0.31 -2.64 16 12 N -0.84 -17.54 4.71 -1.14 -0.01 -17.55 16 13 C -0.54 -14.01 6.85 -34.44 -0.24 -14.24 16 14 H 0.07 1.79 5.68 -52.48 -0.30 1.49 16 15 C 0.07 1.83 5.22 -17.82 -0.09 1.73 16 16 N -0.89 -23.11 9.55 55.43 0.53 -22.58 16 17 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H 0.07 1.08 7.08 -51.93 -0.37 0.72 16 22 H 0.03 0.40 8.04 -51.93 -0.42 -0.02 16 23 H 0.11 2.01 5.70 -51.93 -0.30 1.72 16 24 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 25 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.10 2.42 5.82 -51.93 -0.30 2.12 16 28 H 0.02 0.39 7.78 -51.93 -0.40 -0.01 16 29 H 0.35 8.04 7.19 -39.29 -0.28 7.76 16 30 H 0.32 6.49 8.06 -39.29 -0.32 6.17 16 31 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 267.56 15.07 4.03 4.03 Total: -1.00 -25.60 267.56 -7.19 -32.79 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -3.09 Total: 10.20 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -2.18 Total: -17.60 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.52 Total: -40.13 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.03 Total: -2.55 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.48 Total: -2.74 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.60 -7.19 -32.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238480467.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.536 kcal (2) G-P(sol) polarization free energy of solvation -25.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds