Wall clock time and date at job start Mon Mar 30 2020 07:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38266 * 119.96978 * 2 1 4 4 C 1.38220 * 120.05900 * 180.23234 * 3 2 1 5 5 C 1.38319 * 120.01037 * 359.49586 * 4 3 2 6 6 Cl 1.73596 * 120.02673 * 180.27727 * 5 4 3 7 7 C 1.38556 * 119.95205 * 0.25177 * 5 4 3 8 8 F 1.35093 * 120.02902 * 180.02562 * 7 5 4 9 9 C 1.38190 * 119.97965 * 179.72656 * 2 1 3 10 10 C 1.50703 * 120.00337 * 0.04039 * 9 2 1 11 11 C 1.52998 * 109.46856 * 95.00457 * 10 9 2 12 12 N 1.46900 * 109.47036 * 335.00422 * 10 9 2 13 13 C 1.50699 * 109.47209 * 215.00180 * 10 9 2 14 14 H 1.08005 * 119.99693 * 2.55547 * 13 10 9 15 15 C 1.37878 * 120.00250 * 182.55411 * 13 10 9 16 16 N 1.31514 * 119.99627 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99905 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.47110 * 60.00074 * 17 15 13 19 19 H 1.48503 * 109.46618 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47133 * 299.99720 * 17 15 13 21 21 H 1.09002 * 109.47408 * 263.89385 * 1 2 3 22 22 H 1.09000 * 109.47654 * 23.89201 * 1 2 3 23 23 H 1.08995 * 109.47281 * 143.89750 * 1 2 3 24 24 H 1.07999 * 119.97624 * 359.97438 * 3 2 1 25 25 H 1.07998 * 119.99525 * 179.76899 * 4 3 2 26 26 H 1.08998 * 109.47452 * 58.34834 * 11 10 9 27 27 H 1.09005 * 109.46757 * 178.35354 * 11 10 9 28 28 H 1.09004 * 109.47148 * 298.34495 * 11 10 9 29 29 H 1.00906 * 110.99518 * 176.04337 * 12 10 9 30 30 H 1.00897 * 111.00282 * 299.99760 * 12 10 9 31 31 H 0.96994 * 119.99809 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5799 1.1999 -0.0049 5 6 4.2736 0.0033 0.0008 6 17 6.0095 0.0055 0.0020 7 6 3.5819 -1.1973 0.0061 8 9 4.2579 -2.3669 0.0122 9 6 2.1975 -1.1970 0.0057 10 6 1.4436 -2.5019 0.0110 11 6 1.2983 -3.0127 -1.4238 12 7 0.1114 -2.2953 0.5945 13 6 2.1995 -3.5155 0.8309 14 1 3.1112 -3.2305 1.3351 15 6 1.7273 -4.8065 0.9375 16 7 0.6169 -5.1532 0.3240 17 14 2.6640 -6.0626 1.9545 18 1 2.7508 -5.5950 3.3613 19 1 1.9528 -7.3654 1.9093 20 1 4.0326 -6.2257 1.4017 21 1 -0.3634 -0.1093 1.0218 22 1 -0.3634 0.9396 -0.4162 23 1 -0.3633 -0.8303 -0.6055 24 1 1.6568 2.1326 -0.0004 25 1 4.1183 2.1361 -0.0086 26 1 2.2864 -3.1381 -1.8667 27 1 0.7787 -3.9709 -1.4175 28 1 0.7262 -2.2931 -2.0095 29 1 -0.4376 -3.1409 0.5507 30 1 0.1803 -1.9577 1.5428 31 1 0.2845 -6.0613 0.3993 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238480467.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:13 Heat of formation + Delta-G solvation = -27.902843 kcal Electronic energy + Delta-G solvation = -17731.118067 eV Core-core repulsion = 14759.701762 eV Total energy + Delta-G solvation = -2971.416305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.69584 -40.50094 -37.89589 -36.95573 -33.94290 -32.59560 -30.96421 -29.35845 -27.64646 -26.92263 -24.09125 -22.52194 -21.07783 -18.85372 -17.92186 -17.28120 -17.16613 -16.45631 -16.32353 -15.81938 -15.17171 -14.73829 -14.48756 -14.10857 -13.90512 -13.56284 -13.41029 -13.21642 -12.92645 -12.81404 -12.66469 -12.40032 -12.29580 -12.15872 -12.04116 -11.81661 -11.54429 -11.08404 -10.59493 -9.47692 -9.32467 -8.82638 -8.00392 -6.23256 0.17022 0.34303 1.09400 1.34818 1.37916 1.44400 2.39117 2.65710 3.12693 3.37595 3.90767 4.11401 4.26326 4.37412 4.50409 4.79605 5.00036 5.01899 5.07981 5.13457 5.17409 5.29724 5.32093 5.53818 5.64689 5.76284 5.90154 5.94937 6.17840 6.21992 6.72695 6.94569 7.16074 7.48628 8.87697 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.009686 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.195324 B = 2889.928153 C = 3908.175213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.047 4.047 3 C -0.121 4.121 4 C -0.088 4.088 5 C -0.101 4.101 6 Cl -0.067 7.067 7 C 0.091 3.909 8 F -0.136 7.136 9 C -0.098 4.098 10 C 0.267 3.733 11 C -0.116 4.116 12 N -0.814 5.814 13 C -0.551 4.551 14 H 0.047 0.953 15 C 0.034 3.966 16 N -0.902 5.902 17 Si 0.937 3.063 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.286 1.286 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.171 0.829 25 H 0.167 0.833 26 H 0.011 0.989 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.341 0.659 30 H 0.318 0.682 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 12.402 -0.599 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.139 4.139 4 C -0.107 4.107 5 C -0.129 4.129 6 Cl -0.038 7.038 7 C 0.071 3.929 8 F -0.115 7.115 9 C -0.100 4.100 10 C 0.175 3.825 11 C -0.174 4.174 12 N -0.342 5.342 13 C -0.591 4.591 14 H 0.065 0.935 15 C -0.166 4.166 16 N -0.542 5.542 17 Si 0.765 3.235 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.213 1.213 21 H 0.091 0.909 22 H 0.081 0.919 23 H 0.108 0.892 24 H 0.188 0.812 25 H 0.185 0.815 26 H 0.030 0.970 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.156 0.844 30 H 0.128 0.872 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.363 12.711 -1.222 12.842 hybrid contribution 1.529 -2.328 1.218 3.040 sum 2.891 10.383 -0.004 10.778 Atomic orbital electron populations 1.21003 0.88113 1.02090 1.03599 1.20258 0.98670 0.90767 0.95097 1.21443 0.92947 0.98694 1.00823 1.21164 0.94569 0.95873 0.99063 1.21128 0.84994 0.94333 1.12415 1.98325 1.09314 1.98923 1.97273 1.17682 0.90421 0.80392 1.04425 1.91474 1.80007 1.46487 1.93507 1.20432 0.90893 0.98259 1.00409 1.17112 0.86810 0.86144 0.92458 1.21606 0.98195 1.01954 0.95641 1.60222 1.15123 1.36276 1.22612 1.22234 1.09853 0.96448 1.30553 0.93478 1.25391 0.95728 0.99266 0.96205 1.69751 1.21479 1.19568 1.43359 0.85946 0.78844 0.79176 0.79559 1.20306 1.20565 1.21260 0.90943 0.91939 0.89209 0.81170 0.81537 0.96963 0.90732 0.94836 0.84408 0.87181 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.67 8.14 71.23 0.58 -2.09 16 2 C -0.05 -1.57 5.84 -19.87 -0.12 -1.69 16 3 C -0.12 -3.15 9.67 22.27 0.22 -2.93 16 4 C -0.09 -2.38 9.83 22.28 0.22 -2.16 16 5 C -0.10 -3.50 6.33 22.36 0.14 -3.36 16 6 Cl -0.07 -2.13 28.62 -2.72 -0.08 -2.20 16 7 C 0.09 3.87 6.80 22.39 0.15 4.03 16 8 F -0.14 -6.64 13.54 44.97 0.61 -6.03 16 9 C -0.10 -4.09 4.77 -19.83 -0.09 -4.18 16 10 C 0.27 12.40 0.48 2.04 0.00 12.40 16 11 C -0.12 -5.55 8.44 71.98 0.61 -4.95 16 12 N -0.81 -34.11 4.71 -157.51 -0.74 -34.85 16 13 C -0.55 -29.22 6.85 25.60 0.18 -29.05 16 14 H 0.05 2.64 5.68 -2.91 -0.02 2.63 16 15 C 0.03 1.81 5.22 84.66 0.44 2.26 16 16 N -0.90 -47.42 9.55 21.45 0.20 -47.22 16 17 Si 0.94 43.85 29.54 68.60 2.03 45.87 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H 0.07 2.07 7.08 -2.39 -0.02 2.05 16 22 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 23 H 0.09 3.07 5.70 -2.39 -0.01 3.06 16 24 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 25 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 3.87 5.82 -2.38 -0.01 3.86 16 28 H 0.03 1.44 7.78 -2.38 -0.02 1.42 16 29 H 0.34 15.69 7.19 -89.69 -0.65 15.04 16 30 H 0.32 12.97 8.06 -89.70 -0.72 12.25 16 31 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -56.44 267.56 4.16 -52.28 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.18 Total: 23.86 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 2.32 Total: -31.72 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -0.54 Total: -82.07 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.61 Total: -6.03 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.20 kcal Total: -56.44 4.16 -52.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238480467.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.374 kcal (2) G-P(sol) polarization free energy of solvation -56.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds