Wall clock time and date at job start Mon Mar 30 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86794 * 120.00128 * 2 1 4 4 H 1.48491 * 109.47447 * 240.00188 * 3 2 1 5 5 H 1.48504 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47066 * 119.99892 * 3 2 1 7 7 C 1.40350 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.40105 * 119.99886 * 0.27909 * 7 2 1 10 10 N 1.30482 * 124.92580 * 359.42029 * 9 7 2 11 11 C 1.32839 * 117.99333 * 179.83355 * 10 9 7 12 12 C 1.40710 * 113.09605 * 0.44389 * 11 10 9 13 13 C 1.39244 * 120.36130 * 179.73798 * 12 11 10 14 14 C 1.37752 * 120.29002 * 0.02562 * 13 12 11 15 15 C 1.39064 * 120.16278 * 359.97438 * 14 13 12 16 16 Cl 1.73594 * 119.66074 * 180.02562 * 15 14 13 17 17 C 1.37218 * 120.67912 * 359.97438 * 15 14 13 18 18 F 1.35104 * 119.85071 * 180.02562 * 17 15 14 19 19 S 1.75845 * 124.91963 * 179.72123 * 9 7 2 20 20 H 0.96996 * 120.00290 * 0.02562 * 1 2 3 21 21 H 1.07997 * 119.85627 * 179.97438 * 13 12 11 22 22 H 1.07995 * 119.91762 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6964 -1.2124 5 1 1.2750 2.7464 0.0006 6 1 3.0938 1.6963 1.2125 7 6 2.0078 -1.2155 0.0005 8 1 3.0878 -1.2154 0.0001 9 6 1.3072 -2.4288 -0.0048 10 7 0.0072 -2.5408 0.0003 11 6 -0.5133 -3.7630 -0.0094 12 6 0.4612 -4.7780 -0.0141 13 6 0.0820 -6.1178 -0.0187 14 6 -1.2517 -6.4623 -0.0193 15 6 -2.2290 -5.4730 -0.0146 16 17 -3.9059 -5.9219 -0.0147 17 6 -1.8814 -4.1456 -0.0090 18 9 -2.8447 -3.1982 -0.0040 19 16 2.0526 -4.0214 -0.0119 20 1 -0.4850 0.8400 -0.0004 21 1 0.8368 -6.8902 -0.0228 22 1 -1.5391 -7.5033 -0.0233 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238559797.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:11 Heat of formation + Delta-G solvation = -16.781102 kcal Electronic energy + Delta-G solvation = -14031.769063 eV Core-core repulsion = 11231.921714 eV Total energy + Delta-G solvation = -2799.847348 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 256.977 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.82597 -38.73804 -36.50358 -35.44217 -33.65177 -29.54420 -29.45199 -26.71284 -23.27025 -21.76868 -20.74290 -17.74241 -17.44449 -16.26912 -15.46400 -15.30558 -14.88547 -14.71094 -14.10210 -13.44752 -12.98585 -12.58088 -12.18128 -12.11220 -11.84080 -11.54673 -11.51479 -11.05042 -10.67259 -10.49487 -10.46995 -10.13388 -9.59127 -8.80107 -8.01284 -7.86164 -7.07615 -7.05081 -5.12610 1.58547 1.69600 2.45452 2.66909 2.78124 2.82559 2.85589 3.06580 3.44342 3.57089 4.28860 4.92637 4.92981 5.33346 5.64830 5.92474 6.06868 6.46010 6.47173 6.71476 6.81393 6.91621 7.27860 7.57306 7.74952 8.07702 9.45302 9.67886 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.032064 B = 0.007004 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.053073 B = 3996.502424 C = 4859.708491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.676 5.676 2 C 0.058 3.942 3 Si 0.930 3.070 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.348 4.348 8 H 0.105 0.895 9 C 0.252 3.748 10 N -0.539 5.539 11 C 0.171 3.829 12 C -0.226 4.226 13 C -0.035 4.035 14 C -0.175 4.175 15 C -0.035 4.035 16 Cl -0.078 7.078 17 C 0.074 3.926 18 F -0.130 7.130 19 S -0.107 6.107 20 H 0.292 0.708 21 H 0.120 0.880 22 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 -3.771 -0.035 3.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.295 5.295 2 C -0.176 4.176 3 Si 0.752 3.248 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.388 4.388 8 H 0.123 0.877 9 C 0.003 3.997 10 N -0.258 5.258 11 C 0.035 3.965 12 C -0.347 4.347 13 C -0.059 4.059 14 C -0.198 4.198 15 C -0.065 4.065 16 Cl -0.049 7.049 17 C 0.050 3.950 18 F -0.108 7.108 19 S 0.148 5.852 20 H 0.104 0.896 21 H 0.138 0.862 22 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.010 -3.438 -0.027 3.584 hybrid contribution -0.878 0.499 -0.008 1.011 sum 0.132 -2.939 -0.035 2.942 Atomic orbital electron populations 1.69943 1.07715 1.30415 1.21398 1.26303 0.95312 1.01756 0.94209 0.85970 0.79934 0.78284 0.80614 1.18126 1.19420 1.18121 1.19433 0.95279 0.87844 1.36263 0.87656 1.23707 0.88505 0.92840 0.94690 1.66841 1.08933 1.17623 1.32400 1.19234 0.91896 0.88956 0.96432 1.23221 0.95410 0.97541 1.18548 1.19959 0.94906 0.92918 0.98081 1.20159 0.90682 0.97528 1.11397 1.20305 0.85063 0.92178 1.08981 1.98311 1.16620 1.92782 1.97228 1.16672 0.83211 0.83717 1.11445 1.91440 1.61445 1.63782 1.94158 1.84409 1.08804 1.08145 1.83856 0.89603 0.86171 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.59 11.84 55.57 0.66 -15.94 14 2 C 0.06 1.29 5.50 -17.28 -0.10 1.20 14 3 Si 0.93 16.03 29.56 -169.99 -5.03 11.01 14 4 H -0.26 -4.33 7.11 56.52 0.40 -3.93 14 5 H -0.27 -4.57 7.11 56.52 0.40 -4.17 14 6 H -0.26 -4.33 7.11 56.52 0.40 -3.93 14 7 C -0.35 -8.21 9.39 -38.09 -0.36 -8.56 14 8 H 0.11 2.20 7.85 -52.49 -0.41 1.79 14 9 C 0.25 6.42 7.03 -17.42 -0.12 6.30 14 10 N -0.54 -14.75 8.58 -10.24 -0.09 -14.84 14 11 C 0.17 4.35 6.93 -85.03 -0.59 3.76 14 12 C -0.23 -5.16 6.55 -38.27 -0.25 -5.41 14 13 C -0.03 -0.66 10.05 -39.39 -0.40 -1.06 14 14 C -0.17 -3.15 9.82 -39.45 -0.39 -3.54 14 15 C -0.03 -0.70 6.30 -39.65 -0.25 -0.95 14 16 Cl -0.08 -1.36 28.54 -51.86 -1.48 -2.84 14 17 C 0.07 1.75 7.35 -38.49 -0.28 1.47 14 18 F -0.13 -3.18 16.78 2.25 0.04 -3.14 14 19 S -0.11 -2.40 23.33 -107.50 -2.51 -4.91 14 20 H 0.29 6.39 8.29 -40.82 -0.34 6.05 14 21 H 0.12 1.92 8.06 -52.49 -0.42 1.50 14 22 H 0.13 1.90 8.06 -52.49 -0.42 1.48 14 LS Contribution 241.13 15.07 3.63 3.63 Total: -1.00 -27.13 241.13 -7.89 -35.02 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -0.39 Total: -1.20 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.73 Total: -6.79 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.57 Total: -30.78 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -5.03 Total: 11.01 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.51 Total: -4.91 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.48 Total: -2.84 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.13 -7.89 -35.02 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238559797.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.242 kcal (2) G-P(sol) polarization free energy of solvation -27.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds