Wall clock time and date at job start Mon Mar 30 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86794 * 120.00128 * 2 1 4 4 H 1.48491 * 109.47447 * 240.00188 * 3 2 1 5 5 H 1.48504 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47066 * 119.99892 * 3 2 1 7 7 C 1.40350 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.40105 * 119.99886 * 0.27909 * 7 2 1 10 10 N 1.30482 * 124.92580 * 359.42029 * 9 7 2 11 11 C 1.32839 * 117.99333 * 179.83355 * 10 9 7 12 12 C 1.40710 * 113.09605 * 0.44389 * 11 10 9 13 13 C 1.39244 * 120.36130 * 179.73798 * 12 11 10 14 14 C 1.37752 * 120.29002 * 0.02562 * 13 12 11 15 15 C 1.39064 * 120.16278 * 359.97438 * 14 13 12 16 16 Cl 1.73594 * 119.66074 * 180.02562 * 15 14 13 17 17 C 1.37218 * 120.67912 * 359.97438 * 15 14 13 18 18 F 1.35104 * 119.85071 * 180.02562 * 17 15 14 19 19 S 1.75845 * 124.91963 * 179.72123 * 9 7 2 20 20 H 0.96996 * 120.00290 * 0.02562 * 1 2 3 21 21 H 1.07997 * 119.85627 * 179.97438 * 13 12 11 22 22 H 1.07995 * 119.91762 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6964 -1.2124 5 1 1.2750 2.7464 0.0006 6 1 3.0938 1.6963 1.2125 7 6 2.0078 -1.2155 0.0005 8 1 3.0878 -1.2154 0.0001 9 6 1.3072 -2.4288 -0.0048 10 7 0.0072 -2.5408 0.0003 11 6 -0.5133 -3.7630 -0.0094 12 6 0.4612 -4.7780 -0.0141 13 6 0.0820 -6.1178 -0.0187 14 6 -1.2517 -6.4623 -0.0193 15 6 -2.2290 -5.4730 -0.0146 16 17 -3.9059 -5.9219 -0.0147 17 6 -1.8814 -4.1456 -0.0090 18 9 -2.8447 -3.1982 -0.0040 19 16 2.0526 -4.0214 -0.0119 20 1 -0.4850 0.8400 -0.0004 21 1 0.8368 -6.8902 -0.0228 22 1 -1.5391 -7.5033 -0.0233 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238559797.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:11 Heat of formation + Delta-G solvation = -32.012343 kcal Electronic energy + Delta-G solvation = -14032.429539 eV Core-core repulsion = 11231.921714 eV Total energy + Delta-G solvation = -2800.507825 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 256.977 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.64384 -40.44993 -38.10315 -37.05073 -35.35436 -31.19466 -31.17998 -28.44689 -24.97750 -23.44367 -22.47063 -19.44435 -19.17680 -17.96478 -17.16769 -16.92024 -16.68698 -16.35711 -15.73301 -15.02017 -14.80303 -14.17415 -13.79725 -13.67489 -13.47225 -13.14434 -13.00074 -12.68109 -12.07113 -12.03093 -11.97196 -11.85275 -11.19126 -10.51483 -9.80611 -9.58807 -8.78061 -8.73446 -6.92559 -0.11286 0.02176 0.81512 1.05294 1.24106 1.38289 1.40081 1.57533 1.85441 2.11626 2.61473 3.14277 3.27012 3.71847 4.06026 4.38308 4.44881 4.78723 4.85289 5.11170 5.18391 5.28124 5.66323 5.87494 6.00032 6.31292 7.68899 8.04024 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.032064 B = 0.007004 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.053073 B = 3996.502424 C = 4859.708491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.017 3.983 3 Si 1.013 2.987 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.247 1.247 7 C -0.370 4.370 8 H 0.126 0.874 9 C 0.216 3.784 10 N -0.585 5.585 11 C 0.131 3.869 12 C -0.243 4.243 13 C -0.027 4.027 14 C -0.151 4.151 15 C -0.029 4.029 16 Cl -0.051 7.051 17 C 0.037 3.963 18 F -0.146 7.146 19 S -0.080 6.080 20 H 0.297 0.703 21 H 0.161 0.839 22 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 -5.166 -0.046 5.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.212 4.212 3 Si 0.829 3.171 4 H -0.170 1.170 5 H -0.191 1.191 6 H -0.170 1.170 7 C -0.410 4.410 8 H 0.144 0.856 9 C -0.033 4.033 10 N -0.306 5.306 11 C -0.003 4.003 12 C -0.364 4.364 13 C -0.051 4.051 14 C -0.174 4.174 15 C -0.060 4.060 16 Cl -0.022 7.022 17 C 0.012 3.988 18 F -0.125 7.125 19 S 0.175 5.825 20 H 0.109 0.891 21 H 0.178 0.822 22 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.822 -4.888 -0.039 5.216 hybrid contribution -1.237 0.716 -0.005 1.429 sum 0.585 -4.172 -0.043 4.213 Atomic orbital electron populations 1.70063 1.09928 1.31740 1.23009 1.27478 0.95864 1.05364 0.92499 0.84792 0.78356 0.72790 0.81176 1.17006 1.19136 1.17010 1.20008 0.96400 0.88195 1.36404 0.85644 1.24173 0.88841 0.94752 0.95551 1.66806 1.10249 1.19361 1.34181 1.19615 0.93241 0.89389 0.98055 1.23606 0.95049 0.98753 1.19025 1.20485 0.96422 0.92115 0.96061 1.20735 0.89661 0.99100 1.07862 1.20555 0.87089 0.91254 1.07108 1.98321 1.14624 1.92317 1.96987 1.17076 0.82696 0.84907 1.14113 1.91379 1.61830 1.64720 1.94605 1.84008 1.08304 1.06324 1.83854 0.89126 0.82192 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.28 11.84 21.90 0.26 -37.02 14 2 C 0.02 0.75 5.50 85.39 0.47 1.22 14 3 Si 1.01 32.62 29.56 68.60 2.03 34.65 14 4 H -0.25 -7.47 7.11 99.48 0.71 -6.76 14 5 H -0.27 -8.37 7.11 99.48 0.71 -7.66 14 6 H -0.25 -7.47 7.11 99.48 0.71 -6.76 14 7 C -0.37 -17.81 9.39 23.24 0.22 -17.59 14 8 H 0.13 5.24 7.85 -2.91 -0.02 5.22 14 9 C 0.22 11.36 7.03 85.35 0.60 11.96 14 10 N -0.58 -33.46 8.58 -186.32 -1.60 -35.06 14 11 C 0.13 6.83 6.93 40.54 0.28 7.11 14 12 C -0.24 -10.96 6.55 23.12 0.15 -10.81 14 13 C -0.03 -0.96 10.05 22.40 0.23 -0.74 14 14 C -0.15 -4.88 9.82 22.35 0.22 -4.66 14 15 C -0.03 -1.14 6.30 22.23 0.14 -1.00 14 16 Cl -0.05 -1.67 28.54 -2.72 -0.08 -1.75 14 17 C 0.04 1.76 7.35 22.98 0.17 1.92 14 18 F -0.15 -7.48 16.78 44.97 0.75 -6.72 14 19 S -0.08 -3.59 23.33 -56.49 -1.32 -4.90 14 20 H 0.30 13.62 8.29 -92.71 -0.77 12.85 14 21 H 0.16 4.32 8.06 -2.91 -0.02 4.29 14 22 H 0.18 4.09 8.06 -2.91 -0.02 4.07 14 Total: -1.00 -61.94 241.13 3.80 -58.13 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.28 Total: 5.25 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 2.47 Total: -12.57 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.34 Total: -72.08 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.75 Total: -6.72 kcal Atomic # 14 Polarization: 32.62 SS G_CDS: 2.03 Total: 34.65 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.32 Total: -4.90 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.75 kcal Total: -61.94 3.80 -58.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238559797.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.121 kcal (2) G-P(sol) polarization free energy of solvation -61.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds