Wall clock time and date at job start Mon Mar 30 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00030 * 3 2 1 5 5 H 1.48501 * 109.47062 * 29.99981 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99780 * 3 2 1 7 7 C 1.40342 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.40055 * 119.99949 * 0.27898 * 7 2 1 10 10 N 1.30507 * 124.92097 * 179.71855 * 9 7 2 11 11 C 1.32820 * 118.00185 * 179.97438 * 10 9 7 12 12 C 1.40779 * 113.06919 * 0.02562 * 11 10 9 13 13 C 1.39177 * 120.28115 * 179.97438 * 12 11 10 14 14 C 1.38045 * 120.09059 * 0.02562 * 13 12 11 15 15 F 1.35093 * 119.95440 * 180.02562 * 14 13 12 16 16 C 1.39258 * 120.09076 * 359.97438 * 14 13 12 17 17 C 1.35974 * 120.82886 * 359.97438 * 16 14 13 18 18 Cl 1.73593 * 119.75544 * 180.02562 * 17 16 14 19 19 S 1.75857 * 124.91756 * 359.42143 * 9 7 2 20 20 H 0.96996 * 120.00290 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.95750 * 179.97438 * 13 12 11 22 22 H 1.07991 * 119.58469 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.4875 2.0465 -1.4001 5 1 1.4375 2.6527 0.7000 6 1 3.5376 1.4402 0.7001 7 6 2.0078 -1.2154 0.0005 8 1 3.0878 -1.2153 0.0001 9 6 1.3075 -2.4283 -0.0048 10 7 1.8607 -3.6103 -0.0101 11 6 1.0629 -4.6722 -0.0143 12 6 -0.3039 -4.3352 -0.0128 13 6 -1.2730 -5.3342 -0.0172 14 6 -0.8976 -6.6626 -0.0226 15 9 -1.8405 -7.6300 -0.0274 16 6 0.4518 -7.0068 -0.0241 17 6 1.4156 -6.0477 -0.0208 18 17 3.0893 -6.5082 -0.0235 19 16 -0.4445 -2.5791 0.0021 20 1 -0.4850 0.8400 -0.0004 21 1 -2.3201 -5.0698 -0.0157 22 1 0.7363 -8.0486 -0.0278 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238624281.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:09 Heat of formation + Delta-G solvation = -31.003804 kcal Electronic energy + Delta-G solvation = -13846.096862 eV Core-core repulsion = 11045.632771 eV Total energy + Delta-G solvation = -2800.464091 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 256.977 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.13955 -38.80052 -36.00117 -35.38292 -34.08611 -30.07512 -29.25737 -26.49004 -23.17908 -22.05179 -20.29648 -18.28662 -17.18070 -16.45685 -15.85519 -15.17236 -14.93733 -14.42472 -13.73801 -13.41819 -13.40560 -12.92233 -12.62159 -12.06481 -11.95016 -11.42199 -11.40378 -10.97309 -10.76658 -10.41977 -10.31674 -9.78529 -9.67063 -8.85601 -8.01202 -7.71455 -7.52001 -6.99492 -5.21246 1.50587 1.84699 2.64883 2.70320 2.79117 2.81330 2.89251 3.30642 3.36312 3.49694 4.16934 4.87500 5.12258 5.22776 5.50132 5.90880 6.18461 6.36793 6.44746 6.59143 6.73513 6.94056 7.42911 7.50696 7.83977 7.90657 9.28813 9.37155 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.007025 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.186582 B = 3984.969967 C = 4902.300363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.054 3.946 3 Si 0.951 3.049 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.348 4.348 8 H 0.116 0.884 9 C 0.238 3.762 10 N -0.602 5.602 11 C 0.183 3.817 12 C -0.272 4.272 13 C -0.063 4.063 14 C 0.014 3.986 15 F -0.152 7.152 16 C -0.113 4.113 17 C -0.034 4.034 18 Cl -0.078 7.078 19 S 0.080 5.920 20 H 0.308 0.692 21 H 0.122 0.878 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -0.830 -0.008 0.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.171 4.171 3 Si 0.772 3.228 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.388 4.388 8 H 0.133 0.867 9 C -0.012 4.012 10 N -0.324 5.324 11 C 0.048 3.952 12 C -0.393 4.393 13 C -0.087 4.087 14 C -0.009 4.009 15 F -0.131 7.131 16 C -0.135 4.135 17 C -0.064 4.064 18 Cl -0.049 7.049 19 S 0.337 5.663 20 H 0.122 0.878 21 H 0.140 0.860 22 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.903 0.127 0.008 0.912 hybrid contribution 0.393 -0.519 -0.022 0.651 sum -0.510 -0.392 -0.014 0.643 Atomic orbital electron populations 1.68529 1.08084 1.32004 1.29856 1.26450 0.95210 1.03506 0.91970 0.85549 0.80123 0.76968 0.80151 1.18382 1.19260 1.17500 1.19419 0.96569 0.87031 1.35800 0.86668 1.23592 0.90524 0.93969 0.93143 1.66716 1.34708 0.96122 1.34843 1.18817 0.88103 0.92188 0.96125 1.24445 0.96428 1.02471 1.15984 1.19987 0.98540 0.89748 1.00383 1.16803 0.84912 0.84733 1.14436 1.91386 1.64018 1.62465 1.95261 1.20030 0.90490 0.99036 1.03982 1.19625 0.84398 0.90554 1.11871 1.98290 1.17296 1.92159 1.97179 1.85680 1.11791 0.90534 1.78332 0.87789 0.85988 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.19 10.60 55.57 0.59 -15.60 14 2 C 0.05 1.12 5.50 -17.28 -0.10 1.03 14 3 Si 0.95 15.37 29.56 -169.99 -5.03 10.35 14 4 H -0.26 -4.15 7.11 56.52 0.40 -3.75 14 5 H -0.27 -4.19 7.11 56.52 0.40 -3.79 14 6 H -0.25 -4.06 7.11 56.52 0.40 -3.66 14 7 C -0.35 -8.14 9.45 -38.11 -0.36 -8.50 14 8 H 0.12 2.58 7.85 -52.49 -0.41 2.17 14 9 C 0.24 6.04 7.08 -17.43 -0.12 5.92 14 10 N -0.60 -15.63 10.48 -10.25 -0.11 -15.74 14 11 C 0.18 4.48 6.79 -85.04 -0.58 3.90 14 12 C -0.27 -6.36 6.55 -38.27 -0.25 -6.61 14 13 C -0.06 -1.30 10.04 -39.30 -0.39 -1.69 14 14 C 0.01 0.29 7.31 -39.27 -0.29 0.00 14 15 F -0.15 -2.83 17.27 2.25 0.04 -2.79 14 16 C -0.11 -2.20 9.67 -40.01 -0.39 -2.58 14 17 C -0.03 -0.73 6.36 -38.95 -0.25 -0.98 14 18 Cl -0.08 -1.53 28.87 -51.86 -1.50 -3.03 14 19 S 0.08 1.89 20.28 -107.50 -2.18 -0.29 14 20 H 0.31 5.78 8.29 -40.82 -0.34 5.44 14 21 H 0.12 2.25 8.06 -52.49 -0.42 1.83 14 22 H 0.13 2.18 8.06 -52.49 -0.42 1.76 14 LS Contribution 239.38 15.07 3.61 3.61 Total: -1.00 -25.33 239.38 -7.69 -33.02 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -0.39 Total: -0.01 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -2.72 Total: -9.51 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.48 Total: -31.34 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 15.37 SS G_CDS: -5.03 Total: 10.35 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.18 Total: -0.29 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -1.50 Total: -3.03 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -25.33 -7.69 -33.02 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624281.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.016 kcal (2) G-P(sol) polarization free energy of solvation -25.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds