Wall clock time and date at job start Mon Mar 30 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00030 * 3 2 1 5 5 H 1.48501 * 109.47062 * 29.99981 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99780 * 3 2 1 7 7 C 1.40342 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.40055 * 119.99949 * 0.27898 * 7 2 1 10 10 N 1.30507 * 124.92097 * 179.71855 * 9 7 2 11 11 C 1.32820 * 118.00185 * 179.97438 * 10 9 7 12 12 C 1.40779 * 113.06919 * 0.02562 * 11 10 9 13 13 C 1.39177 * 120.28115 * 179.97438 * 12 11 10 14 14 C 1.38045 * 120.09059 * 0.02562 * 13 12 11 15 15 F 1.35093 * 119.95440 * 180.02562 * 14 13 12 16 16 C 1.39258 * 120.09076 * 359.97438 * 14 13 12 17 17 C 1.35974 * 120.82886 * 359.97438 * 16 14 13 18 18 Cl 1.73593 * 119.75544 * 180.02562 * 17 16 14 19 19 S 1.75857 * 124.91756 * 359.42143 * 9 7 2 20 20 H 0.96996 * 120.00290 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.95750 * 179.97438 * 13 12 11 22 22 H 1.07991 * 119.58469 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.4875 2.0465 -1.4001 5 1 1.4375 2.6527 0.7000 6 1 3.5376 1.4402 0.7001 7 6 2.0078 -1.2154 0.0005 8 1 3.0878 -1.2153 0.0001 9 6 1.3075 -2.4283 -0.0048 10 7 1.8607 -3.6103 -0.0101 11 6 1.0629 -4.6722 -0.0143 12 6 -0.3039 -4.3352 -0.0128 13 6 -1.2730 -5.3342 -0.0172 14 6 -0.8976 -6.6626 -0.0226 15 9 -1.8405 -7.6300 -0.0274 16 6 0.4518 -7.0068 -0.0241 17 6 1.4156 -6.0477 -0.0208 18 17 3.0893 -6.5082 -0.0235 19 16 -0.4445 -2.5791 0.0021 20 1 -0.4850 0.8400 -0.0004 21 1 -2.3201 -5.0698 -0.0157 22 1 0.7363 -8.0486 -0.0278 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238624281.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:08 Heat of formation + Delta-G solvation = -44.170360 kcal Electronic energy + Delta-G solvation = -13846.667807 eV Core-core repulsion = 11045.632771 eV Total energy + Delta-G solvation = -2801.035036 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 256.977 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.69344 -40.50890 -37.66896 -37.02307 -35.74955 -31.72210 -30.97807 -28.20180 -24.88326 -23.71350 -21.98977 -20.00677 -18.83259 -18.11272 -17.50929 -16.75668 -16.50662 -15.96693 -15.37008 -15.16626 -14.97344 -14.49473 -14.24584 -13.65855 -13.51137 -13.05390 -12.90190 -12.67513 -12.03855 -12.00036 -11.91945 -11.38299 -11.33333 -10.53511 -9.84895 -9.45262 -9.11821 -8.74815 -6.97698 -0.18309 0.18095 1.05914 1.21215 1.24560 1.37429 1.57684 1.64635 1.77510 2.10175 2.51841 3.10247 3.49275 3.58669 3.92903 4.32043 4.52199 4.73993 4.77628 4.95692 5.09159 5.23878 5.73605 5.83571 6.14127 6.15219 7.53104 7.78003 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.007025 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.186582 B = 3984.969967 C = 4902.300363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.023 3.977 3 Si 1.024 2.976 4 H -0.253 1.253 5 H -0.254 1.254 6 H -0.252 1.252 7 C -0.367 4.367 8 H 0.116 0.884 9 C 0.205 3.795 10 N -0.633 5.633 11 C 0.154 3.846 12 C -0.292 4.292 13 C -0.065 4.065 14 C 0.024 3.976 15 F -0.141 7.141 16 C -0.100 4.100 17 C -0.048 4.048 18 Cl -0.065 7.065 19 S 0.073 5.927 20 H 0.322 0.678 21 H 0.143 0.857 22 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 -0.583 -0.007 0.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.200 4.200 3 Si 0.840 3.160 4 H -0.177 1.177 5 H -0.178 1.178 6 H -0.175 1.175 7 C -0.407 4.407 8 H 0.134 0.866 9 C -0.045 4.045 10 N -0.357 5.357 11 C 0.020 3.980 12 C -0.414 4.414 13 C -0.089 4.089 14 C 0.001 3.999 15 F -0.120 7.120 16 C -0.123 4.123 17 C -0.079 4.079 18 Cl -0.036 7.036 19 S 0.328 5.672 20 H 0.137 0.863 21 H 0.161 0.839 22 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.098 0.333 0.010 1.148 hybrid contribution 0.396 -0.674 -0.024 0.782 sum -0.702 -0.341 -0.014 0.780 Atomic orbital electron populations 1.68517 1.09337 1.33769 1.28633 1.27425 0.95915 1.05997 0.90663 0.84525 0.78669 0.72374 0.80400 1.17735 1.17783 1.17501 1.19804 0.96952 0.87792 1.36167 0.86623 1.23994 0.91500 0.94568 0.94437 1.66711 1.35717 0.96740 1.36546 1.19213 0.88670 0.93045 0.97094 1.24584 0.96784 1.02655 1.17356 1.20224 0.99179 0.89747 0.99738 1.16818 0.85296 0.84616 1.13165 1.91422 1.63606 1.61861 1.95063 1.20334 0.89880 1.00184 1.01866 1.19805 0.85722 0.90039 1.12355 1.98284 1.16298 1.91849 1.97156 1.85382 1.11159 0.91477 1.79137 0.86337 0.83941 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -32.84 10.60 21.89 0.23 -32.61 14 2 C 0.02 0.95 5.50 85.39 0.47 1.42 14 3 Si 1.02 30.12 29.56 68.60 2.03 32.15 14 4 H -0.25 -7.20 7.11 99.48 0.71 -6.50 14 5 H -0.25 -6.88 7.11 99.48 0.71 -6.17 14 6 H -0.25 -7.36 7.11 99.48 0.71 -6.66 14 7 C -0.37 -17.44 9.45 23.22 0.22 -17.22 14 8 H 0.12 5.29 7.85 -2.91 -0.02 5.27 14 9 C 0.20 10.65 7.08 85.33 0.60 11.25 14 10 N -0.63 -33.77 10.48 -186.35 -1.95 -35.72 14 11 C 0.15 7.61 6.79 40.55 0.28 7.88 14 12 C -0.29 -13.77 6.55 23.12 0.15 -13.62 14 13 C -0.07 -2.63 10.04 22.45 0.23 -2.40 14 14 C 0.02 0.91 7.31 22.47 0.16 1.08 14 15 F -0.14 -4.81 17.27 44.97 0.78 -4.03 14 16 C -0.10 -3.70 9.67 21.99 0.21 -3.49 14 17 C -0.05 -2.07 6.36 22.68 0.14 -1.92 14 18 Cl -0.06 -2.50 28.87 -2.72 -0.08 -2.57 14 19 S 0.07 3.48 20.28 -56.49 -1.15 2.34 14 20 H 0.32 11.71 8.29 -92.71 -0.77 10.94 14 21 H 0.14 5.03 8.06 -2.91 -0.02 5.01 14 22 H 0.16 4.89 8.06 -2.92 -0.02 4.87 14 Total: -1.00 -54.30 239.38 3.61 -50.70 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.28 Total: 6.76 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 2.47 Total: -17.02 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -1.72 Total: -68.32 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.78 Total: -4.03 kcal Atomic # 14 Polarization: 30.12 SS G_CDS: 2.03 Total: 32.15 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.15 Total: 2.34 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -0.08 Total: -2.57 kcal Total: -54.30 3.61 -50.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624281.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.525 kcal (2) G-P(sol) polarization free energy of solvation -54.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds