Wall clock time and date at job start Mon Mar 30 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47385 * 240.00135 * 3 2 1 5 5 H 1.48503 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46872 * 120.00092 * 3 2 1 7 7 C 1.37881 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99392 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46958 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99670 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00141 * 180.02562 * 10 9 7 13 13 C 1.40044 * 119.99966 * 175.54591 * 12 10 9 14 14 C 1.38805 * 120.07106 * 34.63333 * 13 12 10 15 15 C 1.38252 * 119.93689 * 179.74306 * 14 13 12 16 16 Cl 1.73602 * 119.95307 * 180.23314 * 15 14 13 17 17 C 1.38387 * 120.08841 * 0.53216 * 15 14 13 18 18 C 1.38254 * 120.14300 * 359.72335 * 17 15 14 19 19 C 1.38305 * 120.05968 * 0.02562 * 18 17 15 20 20 F 1.35103 * 120.04664 * 179.97438 * 19 18 17 21 21 H 0.97005 * 120.00131 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47018 * 60.00390 * 9 7 2 23 23 H 1.08997 * 109.47318 * 299.99667 * 9 7 2 24 24 H 0.97001 * 119.99806 * 355.53887 * 12 10 9 25 25 H 1.07994 * 120.02870 * 359.97438 * 14 13 12 26 26 H 1.07997 * 119.92961 * 179.70389 * 17 15 14 27 27 H 1.08004 * 119.97584 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4226 -3.4230 -0.0010 12 7 1.7809 -4.9153 -0.0011 13 6 2.6875 -5.9785 -0.0952 14 6 3.9374 -5.8816 0.5007 15 6 4.8283 -6.9350 0.4105 16 17 6.3893 -6.8167 1.1608 17 6 4.4796 -8.0811 -0.2823 18 6 3.2377 -8.1793 -0.8817 19 6 2.3398 -7.1312 -0.7909 20 9 1.1264 -7.2272 -1.3772 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.8296 -5.0934 0.0639 25 1 4.2122 -4.9857 1.0374 26 1 5.1793 -8.9005 -0.3552 27 1 2.9682 -9.0751 -1.4214 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258708373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:47 Heat of formation + Delta-G solvation = -69.003362 kcal Electronic energy + Delta-G solvation = -16112.529407 eV Core-core repulsion = 13003.497755 eV Total energy + Delta-G solvation = -3109.031652 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.036 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.92942 -40.04519 -38.22533 -36.44740 -34.37032 -33.06630 -30.67934 -29.95330 -28.43711 -24.25589 -23.11261 -22.22959 -19.96468 -18.18295 -17.22783 -16.76313 -16.30464 -15.91683 -15.41733 -15.26030 -14.56419 -14.36949 -14.04648 -13.34654 -13.25353 -13.05186 -12.55736 -12.21133 -11.80387 -11.55802 -11.25585 -11.02048 -10.88650 -10.72028 -10.17145 -10.06348 -9.41427 -9.00963 -8.72289 -8.51801 -8.06731 -6.14566 -4.15611 0.88457 1.08743 2.04559 3.17806 3.32972 3.33813 3.35695 3.44164 3.61025 4.12083 4.41397 4.58422 4.91016 5.11935 5.23956 5.33333 5.53458 5.87850 5.94554 6.09382 6.19645 6.36687 6.90612 7.02526 7.15637 7.68080 7.87923 8.17450 8.81884 8.94584 9.49923 10.97528 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.025450 B = 0.005346 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.916745 B = 5236.670903 C = 6225.351234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.009 3.991 10 C 0.516 3.484 11 O -0.518 6.518 12 N -0.686 5.686 13 C 0.147 3.853 14 C -0.094 4.094 15 C -0.025 4.025 16 Cl -0.064 7.064 17 C -0.112 4.112 18 C -0.124 4.124 19 C 0.064 3.936 20 F -0.134 7.134 21 H 0.264 0.736 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.413 0.587 25 H 0.163 0.837 26 H 0.140 0.860 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 -16.828 0.329 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.031 4.031 10 C 0.308 3.692 11 O -0.392 6.392 12 N -0.332 5.332 13 C 0.049 3.951 14 C -0.115 4.115 15 C -0.053 4.053 16 Cl -0.035 7.035 17 C -0.132 4.132 18 C -0.143 4.143 19 C 0.042 3.958 20 F -0.112 7.112 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.250 0.750 25 H 0.180 0.820 26 H 0.158 0.842 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.780 -16.401 0.366 17.393 hybrid contribution -0.252 0.728 -0.087 0.775 sum 5.527 -15.673 0.279 16.621 Atomic orbital electron populations 1.69939 1.06073 1.27278 1.50493 1.25000 0.94932 0.99570 0.94916 0.86446 0.79373 0.82061 0.78946 1.20040 1.21280 1.20030 1.21077 0.94239 0.88859 1.51107 0.90563 1.19292 0.93929 0.89787 1.00046 1.22477 0.91640 0.82647 0.72443 1.90548 1.17806 1.83926 1.46899 1.44158 1.09787 1.04917 1.74351 1.17774 0.92450 0.88143 0.96688 1.21219 0.91759 0.99260 0.99283 1.20753 0.88304 0.95899 1.00317 1.98370 1.26091 1.98254 1.80813 1.20770 0.96602 0.97308 0.98492 1.20842 0.93095 0.98460 1.01914 1.17577 0.83038 0.96306 0.98868 1.91494 1.41308 1.96503 1.81941 0.92662 0.92808 0.92836 0.75014 0.81980 0.84194 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 13.29 55.43 0.74 -24.98 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.51 -14.41 8.92 -34.44 -0.31 -14.72 15 8 H 0.08 2.21 6.75 -52.49 -0.35 1.86 15 9 C 0.01 0.21 5.46 -29.03 -0.16 0.05 15 10 C 0.52 11.16 7.67 -10.98 -0.08 11.08 15 11 O -0.52 -12.55 12.88 5.55 0.07 -12.48 15 12 N -0.69 -11.76 5.23 -9.81 -0.05 -11.81 15 13 C 0.15 2.35 6.31 -83.59 -0.53 1.82 15 14 C -0.09 -1.51 8.48 -39.37 -0.33 -1.85 15 15 C -0.03 -0.34 6.32 -39.52 -0.25 -0.59 15 16 Cl -0.06 -0.81 28.95 -51.86 -1.50 -2.31 15 17 C -0.11 -1.22 9.82 -39.52 -0.39 -1.61 15 18 C -0.12 -1.35 10.02 -39.55 -0.40 -1.75 15 19 C 0.06 0.88 7.31 -39.26 -0.29 0.59 15 20 F -0.13 -1.84 16.96 2.25 0.04 -1.81 15 21 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 22 H 0.05 1.32 8.14 -51.93 -0.42 0.90 15 23 H 0.05 1.30 8.14 -51.93 -0.42 0.87 15 24 H 0.41 5.99 8.67 -40.82 -0.35 5.64 15 25 H 0.16 2.97 6.20 -52.49 -0.33 2.64 15 26 H 0.14 1.14 8.06 -52.49 -0.42 0.71 15 27 H 0.14 1.15 8.06 -52.48 -0.42 0.73 15 LS Contribution 266.26 15.07 4.01 4.01 Total: -1.00 -30.20 266.26 -6.40 -36.60 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -1.86 Total: 1.57 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.83 Total: -5.47 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.69 Total: -36.79 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.20 -6.40 -36.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258708373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.401 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds